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List of taxa with candidatus status

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This is a dynamic list and may never be able to satisfy particular standards for completeness. You can help by adding missing items with reliable sources.

This is a list of taxa with Candidatus status. For taxa not covered by this list, see also:

  • the GenBank taxonomy for "effective" names as published;
  • the Candidatus Lists and LPSN for latinate names, some sanitized to match the Code.[1]

Phyla

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Main article: Candidate division

Classes

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Mariprofundus ferrooxydans, a member of "Ca. Zetaproteobacteria"

Orders

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Families

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Genera

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Species and subspecies

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Unless otherwise noted (♦), these entries are from LPSN.[10]

Transmission electron micrograph of vesicles budding off "Ca. Aciduliprofundum boonei" cells

Former candidatus taxa

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See also

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References

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  1. ^ Oren, A (November 2021). "Nomenclature of prokaryotic 'Candidatus' taxa: establishing order in the current chaos". New Microbes and New Infections. 44: 100932. doi:10.1016/j.nmni.2021.100932. PMC 8487987. PMID 34631108.
  2. ^ a b c Hug LA; et al. (2016). "A new view of the tree of life". Nature Microbiology. Article 16048 (5): 16048. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.
  3. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak "ARB-Silva: comprehensive ribosomal RNA database". The ARB development Team. Retrieved January 2, 2016.
  4. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax ay az ba bb bc bd be bf bg bh bi bj bk bl bm bn bo bp bq br bs bt bu bv bw bx by bz ca cb cc cd ce cf cg ch ci cj "Taxonomy Browser". NCBI. Retrieved 2 January 2016.
  5. ^ a b c d e f g h i j k l m n o p q r s "Hierarchy Browser". Ribosomal database project. Archived from the original on November 21, 2008. Retrieved January 2, 2016.
  6. ^ a b c d e f g h i j k l m n o p q r s t u v w x y Rappé, Michael S.; Giovannoni, Stephen J. (2003). "The Uncultured Microbial Majority". Annual Review of Microbiology. 57: 369–94. doi:10.1146/annurev.micro.57.030502.090759. PMID 14527284.
  7. ^ a b Kenly A. Hiller, Kenneth H. Foreman, David Weisman, Jennifer L. Bowen: Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions. In: Appl Environ Microbiol v.81(20); 2015 Oct; pp.7114–7124. doi:10.1128/AEM.01986-15. PMC 4579450. PMID 26231655.
  8. ^ Wrighton KC; et al. (2014). "Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer". The ISME Journal. 8 (7): 1452–1463. doi:10.1038/ismej.2013.249. PMC 4069391. PMID 24621521.
  9. ^ Yeoh YK; et al. (2015). "Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage". Mol Biol Evol. 33 (4): 915–927. doi:10.1093/molbev/msv281. PMC 4776705. PMID 26615204.
  10. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al Parte, A.C; Euzéby, J.P. (2017). "Names included in the category Candidatus". List of Prokaryotic names with Standing in Nomenclature. Retrieved 4 January 2018.
  11. ^ Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; McIlroy, Simon Jon; Nierychlo, Marta; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær (2016-10-01). "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters". The ISME Journal. 10 (10): 2352–2364. doi:10.1038/ismej.2016.43. ISSN 1751-7370. PMC 5030696. PMID 27058503.
  12. ^ NCBI: Candidate division ZB3 (class), "Cyanobacteria"/"Melainabacteria" group
  13. ^ Sekiguchi Y; et al. (2015). "First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking". PeerJ. 3: e740. doi:10.7717/peerj.740. PMC 4312070. PMID 25650158.
  14. ^ Christopher T. Brown, Laura A. Hug, Brian C. Thomas et al.; et al. (2015). "Unusual biology across a group comprising more than 15% of domain Bacteria" (PDF). Nature. 523 (7559): 208–11. Bibcode:2015Natur.523..208B. doi:10.1038/nature14486. OSTI 1512215. PMID 26083755. S2CID 4397558.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  15. ^ NCBI: Candidatus Peregrinibacteria (phylum)
  16. ^ UniProt: Taxonomy - Candidatus Peregrinibacteria (PHYLUM)
  17. ^ Karthik Anantharaman, Christopher T. Brown, David Burstein, Cindy Castelle: Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. In: PeerJ 4(8):e1607; Jan 2016; doi:10.7717/peerj.1607
  18. ^ Fieseler L; et al. (2004). "Discovery of the Novel Candidate Phylum "Poribacteria" in Marine Sponges". Applied and Environmental Microbiology. 70 (6): 3724–32. Bibcode:2004ApEnM..70.3724F. doi:10.1128/AEM.70.6.3724-3732.2004. PMC 427773. PMID 15184179.
  19. ^ Albertsen M; et al. (2013). "Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes". Nat. Biotechnol. 31 (6): 533–8. doi:10.1038/nbt.2579. PMID 23707974. S2CID 11038964.
  20. ^ Hugenholtz P; et al. (1998). "Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity". Journal of Bacteriology. 180 (18): 4765–74. doi:10.1128/JB.180.18.4765-4774.1998. PMC 107498. PMID 9733676.
  21. ^ Marcy Y; et al. (2007). "Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth". Proc Natl Acad Sci U S A. 104 (29): 11889–94. doi:10.1073/pnas.0704662104. PMC 1924555. PMID 17620602.
  22. ^ Wilson MC; et al. (2014). "An environmental bacterial taxon with a large and distinct metabolic repertoire" (PDF). Nature. 506 (7486): 58–62. Bibcode:2014Natur.506...58W. doi:10.1038/nature12959. PMID 24476823.
  23. ^ Dojka MA; et al. (2000). "Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria". Applied and Environmental Microbiology. 66 (4): 1617–21. Bibcode:2000ApEnM..66.1617D. doi:10.1128/AEM.66.4.1617-1621.2000. PMC 92031. PMID 10742250.
  24. ^ Jon S. Graf, Sina Schorn, Katharina Kitzinger, Soeren Ahmerkamp, Christian Woehle, Bruno Huettel, Carsten J. Schubert, Marcel M. M. Kuypers & Jana Milucka: Anaerobic endosymbiont generates energy for ciliate host by denitrification. In: Nature (3 March, 2021). doi:10.1038/s41586-021-03297-6.
  25. ^ Mattila, J. T., N. Y. Burkhardt, H. J. Hutcheson, U. G. Munderloh, and T. J. Kurtti. 2007. Isolation of cell lines and a rickettsial endosymbiont from the soft tick Carios capensis (Neumann) (Acari: Argasidae: Ornithodorinae). Journal of Medical Entomology 44:1091–1101. "We propose that the isolate RCCE3 be named "Candidatus Rickettsia hoogstraalii" in honor of Harry Hoogstraal who contributed so much to our knowledge of ticks."
  26. ^ O. Mediannikov O, Aubadie-Ladrix M, Raoult D (2015). "Candidatus 'Rickettsia senegalensis' in cat fleas in Senegal". New Microbes New Infect. 3: 24–8. doi:10.1016/j.nmni.2014.10.005. PMC 4337942. PMID 25755888.{{cite journal}}: CS1 maint: multiple names: authors list (link): "We isolated three rickettsial strains, and genetic analysis demonstrated that these strains represent a probable new species, provisionally called Candidatus Rickettsia senegalensis here."
  27. ^ Tamaki H; et al. (2010). "Armatimonas rosea gen. nov., sp. nov., a Gram-negative, aerobic, chemoheterotrophic bacterium of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 6): 1442–7. doi:10.1099/ijs.0.025643-0. PMID 20622056.
  28. ^ Lee KCY; et al. (2010). "Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic microorganism of a novel bacterial class, Chthonomonadetes classis. nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10" (PDF). International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 10): 2482–90. doi:10.1099/ijs.0.027235-0. PMID 21097641.
  29. ^ Mori K; et al. (2009). "Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov". International Journal of Systematic and Evolutionary Microbiology. 59 (Pt 11): 2894–8. doi:10.1099/ijs.0.010033-0. PMID 19628600.
  30. ^ Geissinger O; et al. (2009). "The Ultramicrobacterium Elusimicrobium minutum gen. nov., sp. nov., the first cultivated representative of the Termite Group 1 Phylum". Applied and Environmental Microbiology. 75 (9): 2831–40. Bibcode:2009ApEnM..75.2831G. doi:10.1128/AEM.02697-08. PMC 2681718. PMID 19270135.
  31. ^ Podosokorskaya OA; et al. (2013). "Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae". Environ. Microbiol. 15 (6): 1759–71. doi:10.1111/1462-2920.12067. PMID 23297868.
  32. ^ Cho JC; et al. (2004). "Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae". Environmental Microbiology. 6 (6): 611–21. doi:10.1111/j.1462-2920.2004.00614.x. PMID 15142250.
  33. ^ Lucker S; et al. (2013). "The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer". Front. Microbiol. 4: 27. doi:10.3389/fmicb.2013.00027. PMC 3578206. PMID 23439773.
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