Armatimonadota
| Armatimonadota | |
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Scientific classification 
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| Domain: | Bacteria |
| Clade: | Terrabacteria |
| Phylum: | Armatimonadota Tamaki et al. 2021[1] |
| Class | |
| Synonyms | |
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Armatimonadota is a phylum of gram-negative bacteria.
History
[edit]Armatimonadota was originally described solely on the basis of environmental 16S rRNA gene clone sequences, and was temporarily titled candidate phylum OP10. However, in 2011 a bacterial strain belonging to the phylum was isolated from an aquatic plant in Japan. The species was named Armatimonas rosea and was the first member of its phylum, genus, and species.[2]
Members
[edit]Armatimonas rosea, an aerobic chemoheterotrophic bacterium, strain YO-36T, was isolated from rhizoplane of an aquatic plant (a reed, Phragmites australis) inhabiting a freshwater lake in Japan.[2]
Chthonomonas calidirosea, an aerobic, saccharolytic, obligately thermophilic, motile, non-spore-forming bacterium, strain T49(T), was isolated from geothermally heated soil at Hell's Gate, Tikitere, New Zealand.[3]
Phylogeny
[edit]| 16S rRNA based LTP_12_2021[4][5][6] | GTDB 08-RS214 by Genome Taxonomy Database[7][8][9] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Taxonomy
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[10] and National Center for Biotechnology Information (NCBI).[11]
- Class Chthonomonadia corrig. Lee et al. 2011
- Order Chthonomonadales Lee et al. 2011
- Family Chthonomonadaceae Lee et al. 2011
- Genus Chthonomonas Lee et al. 2011
- Species Chthonomonas calidirosea Lee et al. 2011
- Genus Chthonomonas Lee et al. 2011
- Family Chthonomonadaceae Lee et al. 2011
- Order Chthonomonadales Lee et al. 2011
- Class Fimbriimonadia Im et al. 2012
- Order Fimbriimonadales Im et al. 2012
- Family Fimbriimonadaceae Im et al. 2012
- Genus Fimbriimonas Im et al. 2012
- Species Fimbriimonas ginsengisoli Im et al. 2012
- Genus "Candidatus Nitrosymbiomonas" Okubo et al. 2021
- Species "Ca. Nitrosymbiomonas proteolyticus" Okubo et al. 2021
- Genus Fimbriimonas Im et al. 2012
- Family Fimbriimonadaceae Im et al. 2012
- Order Fimbriimonadales Im et al. 2012
- Class UBA5829
- Order UBA5829
- Family UBA5829
- Genus "Ca. Hippobium" Gilroy et al. 2022
- Species "Ca. Hippobium faecium" Gilroy et al. 2022
- Genus "Ca. Hippobium" Gilroy et al. 2022
- Family UBA5829
- Order UBA5829
- Class Armatimonadia Tamaki et al. 2011
- Order Armatimonadales Tamaki et al. 2011
- Family Armatimonadaceae Tamaki et al. 2011
- Genus Armatimonas Tamaki et al. 2011
- Species Armatimonas rosea Tamaki et al. 2011
- Genus Armatimonas Tamaki et al. 2011
- Family Armatimonadaceae Tamaki et al. 2011
- Order Capsulimonadales Li, Kudo & Tonouchi 2018
- Family Capsulimonadaceae Li, Kudo & Tonouchi 2018
- Genus Capsulimonas Li, Kudo & Tonouchi 2018
- Species Capsulimonas corticalis Li, Kudo & Tonouchi 2018
- Genus Capsulimonas Li, Kudo & Tonouchi 2018
- Family Capsulimonadaceae Li, Kudo & Tonouchi 2018
- Order Armatimonadales Tamaki et al. 2011
Notes
[edit]References
[edit]- ^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
- ^ a b Tamaki, Hideyuki; Tanaka, Yasuhiro; Matsuzawa, Hiroaki; Muramatsu, Mizuho; Meng, Xian-Ying; Hanada, Satoshi; Mori, Kazuhiro; Kamagata, Yoichi (2010). "Armatimonas rosea gen. nov., sp. nov., a Gram-negative, aerobic, chemoheterotrophic bacterium of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 6): 1442–7. doi:10.1099/ijs.0.025643-0. PMID 20622056.
- ^ Lee, Kevin C. Y.; Dunfield, Peter F.; Morgan, Xochitl C.; Crowe, Michelle A.; Houghton, Karen M.; Vyssotski, Mikhail; Ryan, Jason L. J.; Lagutin, Kirill; et al. (2010). "Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic microorganism of a novel bacterial class, Chthonomonadetes classis. nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 10): 2482–90. doi:10.1099/ijs.0.027235-0. PMID 21097641.
- ^ "The LTP". Retrieved 23 February 2021.
- ^ "LTP_all tree in newick format". Retrieved 23 February 2021.
- ^ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ J.P. Euzéby. "Armatimonadetes". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2011-06-13. Retrieved 2016-03-20.
- ^ Sayers; et al. "Armatimonadetes". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.