Balding–Nichols model
Appearance
Probability density function | |||
Cumulative distribution function | |||
Parameters |
(real) (real) For ease of notation, let , and | ||
---|---|---|---|
Support | |||
CDF | |||
Mean | |||
Median | no closed form | ||
Mode | |||
Variance | |||
Skewness | |||
MGF | |||
CF |
In population genetics, the Balding–Nichols model is a statistical description of the allele frequencies in the components of a sub-divided population.[1] With background allele frequency p the allele frequencies, in sub-populations separated by Wright's FST F, are distributed according to independent draws from
where B is the Beta distribution. This distribution has mean p and variance Fp(1 – p).[2]
The model is due to David Balding and Richard Nichols and is widely used in the forensic analysis of DNA profiles and in population models for genetic epidemiology.
References
[edit]- ^ Balding, DJ; Nichols, RA (1995). "A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity". Genetica. 96 (1–2). Springer: 3–12. doi:10.1007/BF01441146. PMID 7607457. S2CID 30680826.
- ^ Alkes L. Price; Nick J. Patterson; Robert M. Plenge; Michael E. Weinblatt; Nancy A. Shadick; David Reich (2006). "Principal components analysis corrects for stratification in genome-wide association studies" (PDF). Nature Genetics. 38 (8): 904–909. doi:10.1038/ng1847. PMID 16862161. S2CID 8127858. Archived from the original (PDF) on 2008-07-03. Retrieved 2009-02-19.