User:Aogarlid

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Anders Olav Garlid, PhD

Postdoctoral Scholar, UCLA Medical & Imaging Informatics

"Reason can be used only when looking critically back." -- Peter D. Mitchell

About me

I am a postdoctoral scholar with the Medical & Imaging Informatics (MII) group at the University of California, Los Angeles in the Departments of Radiology and Bioengineering. I earned my Bachelor's degree in biochemistry and Master's degree in Biology at Portland State University, where I developed an interest in mitochondrial physiology and cellular signaling and became involved in cardiovascular research^[1]^[2]. I earned my PhD in Molecular, Cellular & Integrative Physiology (MCIP) at UCLA in 2019, where my studies shifted to biomedical informatics^[3]^[4] and text-mining^[5]^[6] with a focus on mitochondrial diseases such as Barth syndrome and the associated tafazzin protein^[7].

My work

Currently working on a COVID-19 literature retrieval tool for infectious disease clinicians at UCLA. Developing models to identify patients at risk of swift decline in chronic kidney disease (CKD) and those at risk of developing acute kidney injury (AKI). Contributing to the Gene Wiki Project, improving articles on mitochondrial genes and proteins to make current biomedical knowledge available to the general public and citizen scientists, and supporting the FAIR doctrine to make scientific knowledge Findable, Accessible, Interoperable, and Reusable (FAIR).^[8]

Contact

aogarlid user talk page

References

^ Foster, DB; Ho, AS; Rucker, J; Garlid, AO; Chen, L; Sidor, A; Garlid, KD; O'Rourke, B (3 August 2012). "Mitochondrial ROMK channel is a molecular component of mitoK(ATP)". Circulation research. 111 (4): 446–54. doi:10.1161/CIRCRESAHA.112.266445. PMID 22811560.
^ Garlid, AO; Jaburek, M; Jacobs, JP; Garlid, KD (1 October 2013). "Mitochondrial reactive oxygen species: which ROS signals cardioprotection?". American journal of physiology. Heart and circulatory physiology. 305 (7): H960-8. doi:10.1152/ajpheart.00858.2012. PMID 23913710.
^ Garlid, AO; Polson, JS; Garlid, KD; Hermjakob, H; Ping, P (2017). "Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome". Handbook of experimental pharmacology. 240: 377–401. doi:10.1007/164_2016_93. PMID 27995389.
^ Wang, J; Choi, H; Chung, NC; Cao, Q; Ng, DCM; Mirza, B; Scruggs, SB; Wang, D; Garlid, AO; Ping, P (7 December 2018). "Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy". Journal of proteome research. 17 (12): 4243–4257. doi:10.1021/acs.jproteome.8b00372. PMID 30141336.
^ Caufield, JH; Liem, DA; Garlid, AO; Zhou, Y; Watson, K; Bui, AAT; Wang, W; Ping, P (20 September 2018). "A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts". Journal of visualized experiments : JoVE (139). doi:10.3791/58392. PMID 30295669.
^ Caufield, JH; Zhou, Y; Garlid, AO; Setty, SP; Liem, DA; Cao, Q; Lee, JM; Murali, S; Spendlove, S; Wang, W; Zhang, L; Sun, Y; Bui, A; Hermjakob, H; Watson, KE; Ping, P (20 November 2018). "A reference set of curated biomedical data and metadata from clinical case reports". Scientific data. 5: 180258. doi:10.1038/sdata.2018.258. PMID 30457569.
^ Garlid, AO; Schaffer, CT; Kim, J; Bhatt, H; Guevara-Gonzalez, V; Ping, P (5 February 2020). "TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome". Gene. 726: 144148. doi:10.1016/j.gene.2019.144148. PMID 31647997.
^ Wilkinson, Mark; Dumontier, Michel (15 March 2016). "The FAIR Guiding Principles for scientific data management and stewardship". Scientific Data. 3. doi:10.1038/sdata.2016.18. PMID 26978244.

[1] Foster, DB; Ho, AS; Rucker, J; Garlid, AO; Chen, L; Sidor, A; Garlid, KD; O'Rourke, B (3 August 2012). "Mitochondrial ROMK channel is a molecular component of mitoK(ATP)". Circulation research. 111 (4): 446–54. doi:10.1161/CIRCRESAHA.112.266445. PMID 22811560.

[2] Garlid, AO; Jaburek, M; Jacobs, JP; Garlid, KD (1 October 2013). "Mitochondrial reactive oxygen species: which ROS signals cardioprotection?". American journal of physiology. Heart and circulatory physiology. 305 (7): H960-8. doi:10.1152/ajpheart.00858.2012. PMID 23913710.

[3] Garlid, AO; Polson, JS; Garlid, KD; Hermjakob, H; Ping, P (2017). "Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome". Handbook of experimental pharmacology. 240: 377–401. doi:10.1007/164_2016_93. PMID 27995389.

[4] Wang, J; Choi, H; Chung, NC; Cao, Q; Ng, DCM; Mirza, B; Scruggs, SB; Wang, D; Garlid, AO; Ping, P (7 December 2018). "Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy". Journal of proteome research. 17 (12): 4243–4257. doi:10.1021/acs.jproteome.8b00372. PMID 30141336.

[5] Caufield, JH; Liem, DA; Garlid, AO; Zhou, Y; Watson, K; Bui, AAT; Wang, W; Ping, P (20 September 2018). "A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts". Journal of visualized experiments : JoVE (139). doi:10.3791/58392. PMID 30295669.

[6] Caufield, JH; Zhou, Y; Garlid, AO; Setty, SP; Liem, DA; Cao, Q; Lee, JM; Murali, S; Spendlove, S; Wang, W; Zhang, L; Sun, Y; Bui, A; Hermjakob, H; Watson, KE; Ping, P (20 November 2018). "A reference set of curated biomedical data and metadata from clinical case reports". Scientific data. 5: 180258. doi:10.1038/sdata.2018.258. PMID 30457569.

[7] Garlid, AO; Schaffer, CT; Kim, J; Bhatt, H; Guevara-Gonzalez, V; Ping, P (5 February 2020). "TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome". Gene. 726: 144148. doi:10.1016/j.gene.2019.144148. PMID 31647997.

[8] Wilkinson, Mark; Dumontier, Michel (15 March 2016). "The FAIR Guiding Principles for scientific data management and stewardship". Scientific Data. 3. doi:10.1038/sdata.2016.18. PMID 26978244.

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