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Template:Phylogeny/Squamata/doc

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This template contains a phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species in the combined phylogenomic and supermatrix analysis by Zheng & Wiens (2016))[1].

The template optionally uses {{clade transclude}} as a wrapper that allows partial transclusion of parts of the phylogenetic tree selected by |label= or |subtree=.

Full phylogenetic tree

[edit]
{{Phylogeny/Squamata}}
Squamata
Dibamia

Dibamidae (dibamids)

 

Bifurcata
Gekkota
⊞ (gekkos)

 

Unidentata
Scinciformata
⊞ (skinks and relatives)

 

Episquamata
Laterata
⊞ (true lizards and amphisbaenians)
Teiformata

Gymnophthalmidae Merrem 1820

Teiidae Gray 1827

Lacertibaenia
Lacertiformata

Lacertidae

Amphisbaenia
⊞ (amphisbaenians)

Rhineuridae Vanzolini 1951

Bipedidae Taylor 1951

Blanidae Kearney & Stuart 2004

Cadeidae Vidal & Hedges 2008

Trogonophiidae Gray 1865

Amphisbaenidae Gray 1865

(=Lacertoidea)

 

Toxicofera

 

Partial transclusion of groups

[edit]

A simple example:

{{Phylogeny/Squamata|label=Toxicofera|wrap=}}

Note that the above has three hidden clades that can be expanded and collapsed. The interactive elements can be eliminated with the parameter |nohidden=, as shown in the following example:

{{Phylogeny/Squamata|label=Gekkota|wrap=|nohidden=}}

The above examples used parameter |wrap= to add an outer clade and label, which defaults to the name of the label or subtree selected. Omitting |wrap= allows a custom cladogram to be build around the selection from the template. .

{{clade |style=background-color:#eeeeff;
|label1=[[Laterata]]
|1={{Phylogeny/Squamata|label=LATERATA|nohidden=}}
}}
Laterata
Teiformata

Gymnophthalmidae Merrem 1820

Teiidae Gray 1827

Lacertibaenia
Lacertiformata

Lacertidae

Amphisbaenia

Rhineuridae Vanzolini 1951

Bipedidae Taylor 1951

Blanidae Kearney & Stuart 2004

Cadeidae Vidal & Hedges 2008

Trogonophiidae Gray 1865

Amphisbaenidae Gray 1865

References

[edit]

Some useful references:

  • Zheng & Wiens (2016))[1]
  • Pyron et al (2013)[2]
  • Vidal & Hedges (2009)[3]
  • Reptile Database: Higher Taxa in Extant Reptiles[4]
  • Reeder et al (2015).[5]
  • Hedges 2014 (skinks)[6]
  • Fry al al (2006) (evolution of venom) [7]
  • Snakes
    • Figueroa et al (2016) [8]
    • Reynolds et al (2014) (boas and pythons)[9]
    • Zaher et al (2019) (advanced caenophidian snakes)[10]


  1. ^ a b Zheng, Yuchi; Wiens, John J. (2016). "Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species". Molecular Phylogenetics and Evolution. 94 (Pt B): 537–547. doi:10.1016/j.ympev.2015.10.009. PMID 26475614.
  2. ^ Pyron, R; Burbrink, Frank T; Wiens, John J (2013). "A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes". BMC Evolutionary Biology. 13 (1): 93. Bibcode:2013BMCEE..13...93P. doi:10.1186/1471-2148-13-93. ISSN 1471-2148. PMC 3682911. PMID 23627680.
  3. ^ Vidal, N; Hedges, SB (2009). "The molecular evolutionary tree of lizards, snakes, and amphisbaenians". Comptes Rendus Biologies. 332 (2–3): 129–39. doi:10.1016/j.crvi.2008.07.010. PMID 19281946. S2CID 23137302.
  4. ^ Uetz, P.; et al. (eds.). "Higher Taxa in Extant Reptiles". The Reptile Database. Retrieved 12 October 2019.
  5. ^ Reeder, Tod W.; Townsend, Ted M.; Mulcahy, Daniel G.; Noonan, Brice P.; Wood, Perry L.; Sites, Jack W.; Wiens, John J. (2015). "Integrated Analyses Resolve Conflicts over Squamate Reptile Phylogeny and Reveal Unexpected Placements for Fossil Taxa". PLOS ONE. 10 (3): e0118199. Bibcode:2015PLoSO..1018199R. doi:10.1371/journal.pone.0118199. PMC 4372529. PMID 25803280.
  6. ^ Hedges, SB (2014). "The high-level classification of skinks (Reptilia, Squamata, Scincomorpha)". Zootaxa. 3765 (4): 317–338. doi:10.11646/zootaxa.3765.4.2. PMID 24870904.
  7. ^ Fry, Brian G.; et al. (February 2006). "Early evolution of the venom system in lizards and snakes" (PDF). Nature. 439 (7076): 584–588. Bibcode:2006Natur.439..584F. doi:10.1038/nature04328. PMID 16292255. S2CID 4386245.
  8. ^ Figueroa, Alex; McKelvy, Alexander D.; Grismer, L. Lee; Bell, Charles D.; Lailvaux, Simon P. (2016). Parmakelis, Aristeidis (ed.). "A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus". PLOS ONE. 11 (9): e0161070. Bibcode:2016PLoSO..1161070F. doi:10.1371/journal.pone.0161070. ISSN 1932-6203. PMC 5014348. PMID 27603205.
  9. ^ R. Graham Reynolds; Matthew L. Niemiller; Liam J. Revell (2014). "Toward a Tree-of-Life for the boas and pythons: Multilocus species-level phylogeny with unprecedented taxon sampling". Molecular Phylogenetics and Evolution. 71: 201–213. doi:10.1016/j.ympev.2013.11.011. PMID 24315866.
  10. ^ Zaher, Hussam; Murphy, Robert W.; Arredondo, Juan Camilo; Graboski, Roberta; Machado-Filho, Paulo Roberto; Mahlow, Kristin; Montingelli, Giovanna G.; Quadros, Ana Bottallo; Orlov, Nikolai L.; Wilkinson, Mark; Zhang, Ya-Ping; Grazziotin, Felipe G. (2019). Joger, Ulrich (ed.). "Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)". PLOS ONE. 14 (5): e0216148. Bibcode:2019PLoSO..1416148Z. doi:10.1371/journal.pone.0216148. ISSN 1932-6203. PMC 6512042. PMID 31075128.