The Hernando de Soto expedition narrative records mention a "Yupaha" village they encountered after they left Apalachee, "the sound of which is suggestive of the Alapaha, a tributary of the Suwanee."[2] Another reference to a village of "Atapaha" "so closely resembles Alapaha that it is reasonable to suppose they are the same, and that the town was on the river of that name."[3] John Reed Swanton's landmark Indian Tribes of North America places the Indian village of Alapaha near where the Alapaha River met the Suwanee, and also noted that an Indian village of "Arapaja" was 70 leagues from St. Augustine, Florida, probably on the Alapaha River.[4] The Spanish mission of Santa María de Los Angeles de Arapaha was located along the lower reaches of the river from before 1630 until 1656.[5]
In the 1840s a German travel writer, Friedrich Gerstäcker wrote a dime novel called Alapaha, or the Renegades of the Border, giving the name to a noble Cherokee "squaw." A translation of this novel was published in the 1870s as #67 in a series of American narratives published by Beadle.[6]
During the American Civil War, the swamps along the Alapaha River in Berrien, Irwin, and Echols counties became a refuge for a number of gangs of Confederate deserters.[7]
Near Willacoochee, Georgia, the Alapaha collects the Willacoochee River. In Florida, it collects the Alapahoochee River and the short Little Alapaha River, which rises in Echols County, Georgia, and flows southwestward.
The Alapaha River is an intermittent river for part of its course. During periods of low volume, the river disappears underground and becomes a subterranean river. At approximately 2.3 miles (3.7 km) downstream from Jennings, Florida the Dead River enters the Alapaha River. It is a usually dry river bed with a number of sinkholes, including the Dead River Sink. During periods of low water flow, the Alapaha River downstream from the confluence of the Dead River and the Alapaha River flows upstream into the Dead River.
A few more miles downstream is a second sinkhole variously known as the Alapaha River Sink, Suck Hole, or the Devil's Den on the western bank of the river. At the latter point during the periods of low water flow, the Alapaha River disappears underground leaving a dry bank for much of the remainder of its course. The Alapaha River later reappears at the Alapaha River Rise, which is about a half mile upstream from the confluence of the Alapaha River and the Suwannee River (30°26′46″N83°05′51″W / 30.446044°N 83.097483°W / 30.446044; -83.097483). During a period of low rainfall over 11 miles (18 km) of the riverbed can be dry as the river goes underground.
^U.S. Geological Survey. National Hydrography Dataset high-resolution flowline data. The National MapArchived 2012-03-29 at the Wayback Machine, accessed April 18, 2011
^George Ransford Fairbanks, History of Florida from its discovery by Ponce de Leon, in 1512 to the close of the Florida War in 1842. Philadelphia: J. B. Lippincott & Co., 1871, p. 60.