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Winfried Denk

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Winfried Denk
Born (1957-11-12) November 12, 1957 (age 66)
Munich, Germany
NationalityGerman
OccupationPhysicist
Known forSerial block-face scanning electron microscopy
Two-photon excitation microscopy
AwardsMichael and Kate Bárány Award (1998)
Leibniz Prize (2003)
W. Alden Spencer Award (2006)
Kavli Prize (2012)
Rosenstiel Award (2013)
The Brain Prize (2015)
Academic background
Academic advisorsWatt W. Webb

Winfried Denk (born November 12, 1957, in Munich) is a German physicist. He built the first two-photon microscope while he was a graduate student (and briefly a postdoc) in Watt W. Webb's lab at Cornell University, in 1989.

Early life and education

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Denk was born in Munich, Germany. As a child he spent most of his playtime learning to use the tools and building materials in his father's workshop. In school it became apparent that Denk’s ‘talents were unevenly spread across subjects, math and physics being favored’.[1] Fixing and constructing electronic devices was his main hobby throughout high school.

After high school, Denk completed the mandatory 15-month stint in the German army and spent the next 3 years at the Ludwig Maximilian University of Munich. In 1981 he moved to Zurich to study at the ETH. During this time, he also worked in the lab of Dieter Pohl, at the IBM laboratory. There he built one of the first super-resolution microscopes and developed a passion for scanning microscopy. He did his master's thesis in the lab of Kurt Wüthrich, under the direct guidance of Gerhard Wagner. But he felt that NMR spectroscopy was not for him because it did not involve enough opportunities to create new experimental gadgets.

In 1984 Denk joined the lab of Watt W. Webb at Cornell. While Webb himself was extremely interested in methods – both fluorescence-correlation and photo bleaching-recovery spectroscopy had been invented in his lab – he gave students and postdocs a lot of freedom. Denk enjoyed his time at Cornell but was almost fired after he went to Greece for six weeks to study monk seals. Given a second chance, he started a project aimed at measuring the motion of sensory hair-bundles in the inner ear. One of the attractions of this endeavor was that it required a stay in San Francisco, in order to learn from Jim Hudspeth and his group about hair-cells in general and specifically how to prepare them for the planned measurements.

Denk returned to Cornell and invented a method sensitive enough to measure the thermal movement of hair-bundles. He went on to show that hair cells can sense their own Brownian motion.[2]

Central to Denk's early career was his intuition that two-photon (2p) imaging might damage the sample less than one-photon confocal imaging.[3] He predicted this in spite of the fact that peak light intensity for 2p is almost one million times higher than for the confocal microscope. Equally important was his insight that infrared 2p excitation would allow scattered fluorescence to contribute to images even deep in turbid samples, improving the optical access and resolution of 2p imaging over what was possible using confocal imaging.[4]

Nowhere has this proven more valuable than when imaging neurons in living brain tissue. Two-photon microscopy remains the only technique that allows the recording of activity in living brains with high spatial resolution. 2p excitation can also be used to map cells' receptor distributions by releasing substances from their chemical "cages".[4]

Denk later demonstrated that 2p can be utilized to record activity in the visually stimulated retina.[5] He also showed that it can be combined with adaptive optics to improve resolution, and with amplified pulses to push the depth limit to 1mm in brain tissue.[6][7] Today, two-photon excitation microscopy is also used in the fields of physiology, embryology and tissue engineering, as well as in cancer research.

The sparsity of data on connectivity between neurons had been a major limitation in circuit neuroscience. Denk’s 2004 paper[8] describing automated serial blockface microscopy rekindled the dormant science of comprehensive neural circuit mapping (connectomics), pioneered by Sydney Brenner.[9]

Denk, now Director at the Max Planck Institute for Biological Intelligence (formerly Max Planck Institute of Neurobiology[10]), continues working to improve techniques for circuit-mapping in the rodent brain.[11] His most recent work involves precisely determining the positions, orientations, and identities of proteins and bound ligands in cryo-preserved cells.[12][13]

Notable papers

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Denk, Stricker & Webb1990, Science. Two-photon laser scanning fluorescence microscopy[3]

Denk 1994, Proc Natl Acad Sci USA. Two-photon scanning photochemical microscopy: mapping ligand-gated ion channel distribution[4]

Yuste & Denk 1995, Nature. Dendritic spines as basic functional units of neuronal integration[14]

Svoboda, Tank & Denk 1996, Science. Direct measurement of coupling between dendritic spines and shafts.[15]

Euler, Detwiler & Denk 2002, Nature. Directionally selective calcium signals in dendrites of starburst amacrine cells.[16]

Denk & Horstmann 2004, PLoS Biology. Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure[8]

Helmchen & Denk 2005, Nature Methods. Deep tissue two-photon microscopy[7]

Briggman et al. 2011, Nature. Wiring specificity in the direction-selectivity circuit of the retina[17]

Helmstaedter et al. 2013, Nature. Connectomic reconstruction of the inner plexiform layer in the mouse retina[18]

Recognition

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Service

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References

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  1. ^ "Kavli biosketch". The Kavli Prize. 20 March 2014. Retrieved 2020-06-27.
  2. ^ Denk, W.; Webb, W. W.; Hudspeth, A. J. (1989-07-01). "Mechanical properties of sensory hair bundles are reflected in their Brownian motion measured with a laser differential interferometer". Proceedings of the National Academy of Sciences. 86 (14): 5371–5375. Bibcode:1989PNAS...86.5371D. doi:10.1073/pnas.86.14.5371. ISSN 0027-8424. PMC 297624. PMID 2787510.
  3. ^ a b Denk, W; Strickler, J.; Webb, W. (1990-04-06). "Two-photon laser scanning fluorescence microscopy". Science. 248 (4951): 73–76. Bibcode:1990Sci...248...73D. doi:10.1126/science.2321027. ISSN 0036-8075. PMID 2321027.
  4. ^ a b c Denk, W. (1994-07-05). "Two-photon scanning photochemical microscopy: mapping ligand-gated ion channel distributions". Proceedings of the National Academy of Sciences. 91 (14): 6629–6633. Bibcode:1994PNAS...91.6629D. doi:10.1073/pnas.91.14.6629. ISSN 0027-8424. PMC 44256. PMID 7517555.
  5. ^ Denk, W.; Detwiler, P. B. (1999-06-08). "Optical recording of light-evoked calcium signals in the functionally intact retina". Proceedings of the National Academy of Sciences. 96 (12): 7035–7040. Bibcode:1999PNAS...96.7035D. doi:10.1073/pnas.96.12.7035. ISSN 0027-8424. PMC 22046. PMID 10359834.
  6. ^ Rueckel, M.; Mack-Bucher, J. A.; Denk, W. (2006-11-14). "Adaptive wavefront correction in two-photon microscopy using coherence-gated wavefront sensing". Proceedings of the National Academy of Sciences. 103 (46): 17137–17142. Bibcode:2006PNAS..10317137R. doi:10.1073/pnas.0604791103. ISSN 0027-8424. PMC 1634839. PMID 17088565.
  7. ^ a b Helmchen, Fritjof; Denk, Winfried (2005). "Deep tissue two-photon microscopy". Nature Methods. 2 (12): 932–940. doi:10.1038/nmeth818. ISSN 1548-7091. PMID 16299478. S2CID 3339971.
  8. ^ a b Denk, Winfried; Horstmann, Heinz (2004-10-19). "Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure". PLOS Biology. 2 (11): e329. doi:10.1371/journal.pbio.0020329. ISSN 1545-7885. PMC 524270. PMID 15514700.
  9. ^ White, J. G.; Southgate, E.; Thomson, J. N.; Brenner, S. (1986-11-12). "The structure of the nervous system of the nematode Caenorhabditis elegans". Philosophical Transactions of the Royal Society of London. B, Biological Sciences. 314 (1165): 1–340. Bibcode:1986RSPTB.314....1W. doi:10.1098/rstb.1986.0056. ISSN 0080-4622. PMID 22462104.
  10. ^ "New Max Planck Institute for Biological Intelligence, in foundation". Retrieved 2022-04-20.
  11. ^ Mikula, Shawn; Denk, Winfried (2015). "High-resolution whole-brain staining for electron microscopic circuit reconstruction". Nature Methods. 12 (6): 541–546. doi:10.1038/nmeth.3361. ISSN 1548-7091. PMID 25867849. S2CID 8524835.
  12. ^ Rickgauer, J. Peter; Choi, Heejun; Lippincott-Schwartz, Jennifer; Denk, Winfried (2020-04-24). "Label-free single-instance protein detection in vitrified cells". doi:10.1101/2020.04.22.053868. S2CID 218467026. Retrieved 2020-10-10. {{cite journal}}: Cite journal requires |journal= (help)
  13. ^ Rickgauer, J Peter; Grigorieff, Nikolaus; Denk, Winfried (2017-05-03). "Single-protein detection in crowded molecular environments in cryo-EM images". eLife. 6: e25648. doi:10.7554/eLife.25648. ISSN 2050-084X. PMC 5453696. PMID 28467302.
  14. ^ Yuste, Rafael; Denk, Winfried (1995). "Dendritic spines as basic functional units of neuronal integration". Nature. 375 (6533): 682–684. Bibcode:1995Natur.375..682Y. doi:10.1038/375682a0. ISSN 0028-0836. PMID 7791901. S2CID 4271356.
  15. ^ Svoboda, K.; Tank, D. W.; Denk, W. (1996-05-03). "Direct Measurement of Coupling Between Dendritic Spines and Shafts". Science. 272 (5262): 716–719. Bibcode:1996Sci...272..716S. doi:10.1126/science.272.5262.716. ISSN 0036-8075. PMID 8614831. S2CID 23080041.
  16. ^ Euler, Thomas; Detwiler, Peter B.; Denk, Winfried (2002). "Directionally selective calcium signals in dendrites of starburst amacrine cells". Nature. 418 (6900): 845–852. Bibcode:2002Natur.418..845E. doi:10.1038/nature00931. ISSN 0028-0836. PMID 12192402. S2CID 1879454.
  17. ^ Briggman, Kevin L.; Helmstaedter, Moritz; Denk, Winfried (2011). "Wiring specificity in the direction-selectivity circuit of the retina". Nature. 471 (7337): 183–188. Bibcode:2011Natur.471..183B. doi:10.1038/nature09818. ISSN 0028-0836. PMID 21390125. S2CID 4425160.
  18. ^ Helmstaedter, Moritz; Briggman, Kevin L.; Turaga, Srinivas C.; Jain, Viren; Seung, H. Sebastian; Denk, Winfried (2013-08-07). "Connectomic reconstruction of the inner plexiform layer in the mouse retina". Nature. 500 (7461): 168–174. Bibcode:2013Natur.500..168H. doi:10.1038/nature12346. ISSN 0028-0836. PMID 23925239. S2CID 3119909.
  19. ^ "Prizes awarded by the Optoelectronics Fund". The Rank Prize Funds. Retrieved 2020-06-27.
  20. ^ "2012 Kavli Prize Laureates in Neuroscience". The Kavli Foundation. 2012-05-31. Retrieved 2017-07-21.
  21. ^ "Winfried Denk".
  22. ^ "Rosenstiel Award Past Winners". Rosenstiel Basic Medical Sciences Research Center. Retrieved 2020-06-27.
  23. ^ "The Brain Prize – Prize Winners 2015". The Lundbeck Foundation, The Brain Prize. Retrieved 2017-07-21.
  24. ^ "International Prize for Translational Neuroscience". Gertrud Reemtsma Foundation. Retrieved 2017-07-21.
  25. ^ "List of Members: Winfried Denk". Leopoldina. Retrieved 2020-06-27.
  26. ^ "Prof. Dr. Winfried Denk". Bayerische Akademie der Wissenschaften. Retrieved 2020-06-27.
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