Jump to content

User:Videsh Ramsahai/Biota phylogeny

From Wikipedia, the free encyclopedia

Based on a compilation of the following works.[1][2][3][4][5][6][7][8][9][10][11]

Biota
Prionobiota[14]

Prionida (Proteinaceous infecting agents)

Virusobiota[14]

?Defective interfering particle

?Naldaviricetes (nuclear arthropod large DNA viruses)

?Satellite nucleic acids

Viroida (Viroids)

Kolmioviridae {Ribozyviria}

Tokiviricetes {Adnaviria: Zilligvirae: Taleaviricota}

Heunggongvirae {Duplodnaviria} (HK97 MCP viruses)

Varidnaviria

Halopanivirales {Helvetiavirae: Dividnaviricota: Laserviricetes} (Vertical single jelly-roll MCP viruses)

Bamfordvirae (Vertical double jelly-roll MCP viruses)

Monodnaviria
Riboviria

?Single-stranded RNA satellite viruses

Revtraviricetes ICTV 2019 {Pararnavirae: Artverviricota} (Retro-transcribing viruses)

Orthornavirae (RNA Viruses)

LUCA

"Chloroflexota" {Chloroflexae} (green non-sulfur bacteria)

"Dormibacterota"

"Deinococcota"

"Actinomycetota" {Actinobacteriobiontes} (high G+C Gram-positive bacteria)

Firmicutes

Cyanoprokaryota

"Patescibacteria" {Candidate Phyla Radiation group}

Thermotogida Luketa 2012

Hydrobacterida[12]

Neomura[12]

DPANN Rinke et al. 2013

Euryarchaeida Luketa 2012

Proteoarchaeota

"Thermoproteota" {Crenarchaeida} (TACK superphylum)

Eukaryomorpha

"Asgardaeota" (Asgard group)

"Heimdallarchaeota" Zaremba-Niedzwiedzka et al. 2017

Eucaryota[13] Chatton 1925


Eucaryota

Euglenozoa Cavalier-Smith 1981 emend. Simpson 1997

Percolozoa Cavalier-Smith 1991

Tsukubea Cavalier-Smith 2013

Orthokaryota

Jakobea Cavalier-Smith 1999

Neokaryota

Hemimastigophora Foissner, Blatterer & Foissner 1988 sensu Cavalier-Smith 1993

Diaphoretickes

Haptobionta sensu Boudouresque 2015

Telonemae Tedersoo 2017

Harosa Cavalier-Smith 2010 (SAR clade)

Cryptobionta sensu Kussakin & Drozdov 1994

Picozoa Seenivasan et al. 2013 stat. nov. Tedersoo 2017

Archaeplastida (Red algae, green algae & plants)

Scotokaryota

Metamonada Cavalier-Smith 1987 emend. Cavalier-Smith 2003

Opimoda

Planomonadida Cavalier-Smith 2008

Malawimonadea Cavalier-Smith 2003

"Rigifilae" Tedersoo 2017 (CRuMs)

Amorphea

Amoebozoa Lühe 1913 emend. Cavalier-Smith 1998

Obazoa

Breviatea Cavalier-Smith 2004

Apusomonadida Karpov & Mylnikov 1989

Opisthokonta
Holomycota

"Nucleariae" Tedersoo 2018

Mycota (Fungi)

Holozoa

Ichthyosporea Cavalier-Smith 1998

Corallochytrea Cavalier-Smith 1998

Tunicaraptor unikontum Tikhonenkov et al. 2020

Filozoa

Filasterea Shalchian-Tabrizi et al. 2008

Apoikozoa

Choanoflagellatea Cavalier-Smith 1998

Metazoa Haeckel 1874 (Animals)

References

[edit]
  1. ^ Cavalier-Smith T (March 2002). "The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa". Int. J. Syst. Evol. Microbiol. 52 (Pt 2): 297–354. doi:10.1099/00207713-52-2-297. PMID 11931142.
  2. ^ Cavalier-Smith, Thomas (2003). "Protist phylogeny and the high-level classification of Protozoa". European Journal of Protistology. 39 (4): 338–348. doi:10.1078/0932-4739-00002.
  3. ^ Cavalier-Smith T (2013). "Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa". Eur J Protistol. 49 (2): 115–78. doi:10.1016/j.ejop.2012.06.001.
  4. ^ Cavalier-Smith T, Chao EE, Snell EA, Berney C, Fiore-Donno AM, Lewis R (2014). "Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa". Mol Phylogenet Evol. 81: 71–85. doi:10.1016/j.ympev.2014.08.012.
  5. ^ Ruggiero; et al. (2015), "Higher Level Classification of All Living Organisms", PLoS ONE, 10 (4), doi:10.1371/journal.pone.0119248{{citation}}: CS1 maint: unflagged free DOI (link)
  6. ^ Silar, Philippe (2016), "Protistes Eucaryotes: Origine, Evolution et Biologie des Microbes Eucaryotes", HAL archives-ouvertes: 1–462
  7. ^ Cavalier-Smith, Thomas (5 September 2017). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences". Protoplasma: 1–61. doi:10.1007/s00709-017-1147-3.
  8. ^ "Virus Taxonomy: 2019 Release". International Committee on Taxonomy of Viruses (ICTV).
  9. ^ "GTDB release 06-RS202". Genome Taxonomy Database.
  10. ^ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
  11. ^ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
  12. ^ a b Cavalier-Smith T (2006). "Cell evolution and Earth history: stasis and revolution" (PDF). Philos Trans R Soc Lond B Biol Sci. 361 (1470): 969–1006. doi:10.1098/rstb.2006.1842. PMC 1578732. PMID 16754610.
  13. ^ Koonin E. (2015). "Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier?" (PDF). Philos Trans R Soc Lond B Biol Sci. 370 (1678). doi:10.1098/rstb.2014.0333.
  14. ^ a b Luketa A. (2012). "New views on the megaclassification of life" (PDF). Protistology. 7 (4): 218–237.