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Computational Biology Department
TypePrivate
Established2007 (as Lane Center for Computational Biology)
Location
Pittsburgh, Pennsylvania
CampusUrban
Websitehttp://www.cbd.cmu.edu/

The Computational Biology Department (CBD) is a division within the School of Computer Science at Carnegie Mellon University in Pittsburgh, Pennsylvania, United States. It is located in the Gates-Hillman Center.

Established in 2007 by Robert F. Murphy as the Lane Center for Computational Biology with funding from Raymond J. Lane and Stephanie Lane[1], CBD became a department within the School of Computer Science in 2009[2].

CBD faculty and students conduct research in genomics[3][4], systems biology[5], and biological imaging[6][7]. Its faculty have served as president of the National Science Foundation[8], president of the International Society of Advanced Cytometry[9], and as a member of the National Institutes of Health Council of Councils[10]; they have won the Overton Prize[11], the Okawa Award[12], a United States Air Force Young Investigator Award,[13] and a Presidential Young Investigator Award[14].

As part of the HHMI-NIBIB Interfaces Initiative[15], CBD received funding from Howard Hughes Medical Institute[16] and the National Institute of Biomedical Imaging and Bioengineering (NIBIB)[17] to develop an interdisciplinary Ph.D. program in computational biology with the University of Pittsburgh, which was founded as the Joint CMU-Pitt Ph.D. Program in Computational Biology in 2005[18]. This program is currently receiving training support through a National Institutes of Health T32 Training Grant[19].

Notable faculty[20]

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Notable meetings hosted

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  • RECOMB 2014[21]
  • Great Lakes Bioinformatics Conference 2013 (joint with University of Pittsburgh)[22]
  • Automated Personal Genome Analysis (APGA) 2013[23]
  • Bioimage Informatics 2010[24]

Degree programs

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  • Joint CMU-Pitt Ph.D. Program in Computational Biology (with University of Pittsburgh)
  • M.S. in Computational Biology (joint with the Department of Biological Sciences)[25]
  • M.S. in Biotechnology Innovation and Computation (joint with Language Technologies Institute)[26]
  • B.S. in Computational Biology (joint with the Department of Biological Sciences)[27]
  • Minor in Computational Biology[28]

References

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  1. ^ (CMU), Carnegie Mellon University. "Sept. 20: Carnegie Mellon Establishes Ray and Stephanie Lane Center for Computational Biology - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  2. ^ (CMU), Carnegie Mellon University. "Sept. 22: Computational Biology Becomes Department in Carnegie Mellon's School of Computer Science - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  3. ^ "Computational Method Dramatically Speeds Up Estimates Of Gene Expression, CMU, UMD Researchers Report | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-15.
  4. ^ Patro, Rob; Mount, Stephen M.; Kingsford, Carl (2014-05-01). "Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms". Nature Biotechnology. 32 (5): 462–464. doi:10.1038/nbt.2862. ISSN 1087-0156. PMC 4077321. PMID 24752080.
  5. ^ Kanfi, Yariv; Naiman, Shoshana; Amir, Gail; Peshti, Victoria; Zinman, Guy; Nahum, Liat; Bar-Joseph, Ziv; Cohen, Haim Y. "The sirtuin SIRT6 regulates lifespan in male mice". Nature. 483 (7388): 218–221. doi:10.1038/nature10815.
  6. ^ "Active machine learning-driven experimentation to determine compound effects on protein patterns". eLife. 2016-02-03. doi:10.7554/eLife.10047. Retrieved 2016-03-15.{{cite web}}: CS1 maint: unflagged free DOI (link)
  7. ^ "Scientists' Robotically Driven System Could Reduce Cost of Discovering Drug and Target Interactions | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-15.
  8. ^ "Subra Suresh Biography". www.nsf.gov. Retrieved 2016-03-15.
  9. ^ "Past Presidents - ISAC-NET". isac-net.org. Retrieved 2016-03-29.
  10. ^ "Murphy Appointed to NIH Council of Councils | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-29.
  11. ^ "2012 Overton Prize: Ziv Bar-Joseph". www.iscb.org. Retrieved 2016-03-15.
  12. ^ "Carbonell Wins Okawa Prize". www.scs.cmu.edu. Retrieved 2016-03-15.
  13. ^ "Air Force invests more than $14M for 2010 Young Investigators Research Program". www.wpafb.af.mil. Retrieved 2016-03-15.
  14. ^ "NSF Award Search: Award#8351364 - Presidential Young Investigator Award". www.nsf.gov. Retrieved 2016-03-29.
  15. ^ "HHMI-NIBIB Interfaces Initiative". HHMI.org. Retrieved 2016-03-14.
  16. ^ "Institute News: HHMI Awards $10 Million for Interdisciplinary Graduate Education". HHMI.org. Retrieved 2016-03-14.
  17. ^ "NIBIB Invests in Interdisciplinary Graduate Research Training". www.nibib.nih.gov. Retrieved 2016-03-14.
  18. ^ "Carnegie Mellon Press Release: September 6, 2005". www.cmu.edu. Retrieved 2016-03-14.
  19. ^ "Project Information - NIH RePORTER - NIH Research Portfolio Online Reporting Tools Expenditures and Results". projectreporter.nih.gov. Retrieved 2016-03-15.
  20. ^ University, Carnegie Mellon. "Voting Faculty-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Retrieved 2016-03-14.
  21. ^ "RECOMB 2014 - April 2-5, Pittsburgh, Pennsylvania". murphylab.web.cmu.edu. Retrieved 2016-03-14.
  22. ^ "HOME". www.iscb.org. Retrieved 2016-03-14.
  23. ^ University, Carnegie Mellon. "Automated Personal Genome Analysis for Clinical Advisors: Challenges and Solutions -Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Retrieved 2016-03-29.
  24. ^ University, Carnegie Mellon. "Bioimage Informatics 2010-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Retrieved 2016-03-14.
  25. ^ University, Carnegie Mellon. "M.S. in Computational Biology - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  26. ^ "Biotechnology Innovation and Computation at Carnegie Mellon University". bic.cs.cmu.edu. Retrieved 2016-03-14.
  27. ^ University, Carnegie Mellon. "B.S. in Computational Biology-Computational Biology Department - Carnegie Mellon University". www.cbd.cmu.edu. Retrieved 2016-03-14.
  28. ^ University, Carnegie Mellon. "Minor in Computational Biology-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Retrieved 2016-03-14.
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