User:Nathan Hotaling/sandbox
DiameterJ
[edit]| Developer(s) | Nathan Hotaling |
|---|---|
| Stable release | X.004
/ 12 February 2015 |
| Operating system | Any (Java-based) |
| Type | Image processing |
| License | Public Domain |
| Website | imagej |
DiameterJ[1] is a free, open source image analysis plugin created for ImageJ[2][3] and FIJI[4] developed at the National Institute of Standards and Technology. DiameterJ is a validated nanofiber diameter analysis software tool. DiameterJ analyzes images of fibers, after the image has been segmented, and finds the diameter of nanofibers or microfibers at every pixel along the fiber central axis and produces a histogram of these diameters. DiameterJ also produces summary statistics of fiber diameter including mean fiber diameter, most occurring fiber diameter (mode), standard deviation of fiber diameter, percent of image that is not fiber (pore space), histograms of pore sizes, average length between fiber intersections, and number of fiber intersections per unit area. DiameterJ also bundles OrientationJ[5] for a complete analysis of fiber orientation within an image.
See Also
[edit]References
[edit]- ^ Hotaling NA, Bharti K, Kriel H, Simon CG. DiameterJ: Validated Open Source Nanofiber Diameter Measurement Tool. Biomaterials, Submitted. 2015.
- ^ Schneider, C.A., Rasband, W.S., Eliceiri, K.W. "NIH Image to ImageJ: 25 years of image analysis". Nature Methods 9, 671-675, 2012
- ^ Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, http://imagej.nih.gov/ij/, 1997-2014.
- ^ Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, et al. Fiji: an open-source platform for biological-image analysis. Nat Methods 2012; 9:676–82. doi:10.1038/nmeth.2019.
- ^ R. Rezakhaniha, A. Agianniotis, J. T. C. Schrauwen, A. Griffa, D. Sage, C. V. C. Bouten, F. N. van de Vosse, M. Unser and N. Stergiopulos, Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy, Biomechanics and modeling in mechanobiology, SpringerLink (DOI: 10.1007/s10237-011-0325-z)