User:Michael Goodyear/Clades

For this page keep align=left

• Template:Clade Basic
• Template:Cladogram Puts in box
• Template:Cladex Enables bracketing - only use on bracketed leaves
• Template:Barlabel Adds label to bracket - outside of box, so don't use on cladogram

Line label: |label1=A
Node label: |1=Node

{{clade |1={{clade |label1=A |1=Node }} }} displays as

	A Node

1. Simple bifid (sister relationship)

Split line by:
|1=A |2=B

{{clade |1={{clade |1=leaf A |2=leaf B }} }} displays as

	A B

add |staten=dashed after leafn to make dashed line

	leaf A leaf B

{{Clade |1={{clade |label1='''A''' |1=[[Rhododendron subg. Rhododendron|''Rhododendron'']] |label2= |2=''[[Choniastrum]]'' }} }} displays as

	A Rhododendron Choniastrum

2. Two layers

{{Clade|title=Cladogram of Rhododendron (Goetsch ''et al.'' 2005) |1={{clade |label1='''A''' |1={{clade |1=[[Rhododendron subg. Rhododendron|''Rhododendron'']] |2=''[[Choniastrum]]'' }} |label2='''B''' |2=''[[Hymenanthes]]'' }} }} displays as

	A Rhododendron Choniastrum B Hymenanthes

3. Multiple branches

{{Clade|title=3. Cladogram of Rhododendron (Goetsch ''et al.'' 2005) |1={{clade |1={{clade |label1='''A''' |1={{clade |1=[[Rhododendron subg. Rhododendron|''Rhododendron'']] |2=''[[Choniastrum]]'' }} |label2='''B''' |2=''[[Hymenanthes]]'' }} |label2='''C''' |2= ''[[Azaleastrum]]'' }} }} displays as

	A Rhododendron Choniastrum B Hymenanthes C Azaleastrum

Add label to initial prong with |label1=Label

Rhododendron	A Rhododendron Choniastrum B Hymenanthes C Azaleastrum

4. Boxing with Cladogram, eg Rhododendron box

To convert to Cladogram bracket between: note cladograms default to right

{{cladogram | title= {{anchor|Clad3}}Cladogram III: Tribes of subfamily Amaryllidoideae | align=left | cladogram={{clade|style=font-size:92%;line-height:100%;width:700px; }}}}

ie replaces initial {{clade|title= etc

• Note: |align= must be outside |cladogram= - examples use Default, align=center, align = left

{{Cladogram|title= Cladogram of Rhododendron (Goetsch ''et al.'' 2005) |cladogram={{clade| style=width:{{{width|300}}}px; |align= left *Wrong* |1={{clade |1={{clade |1={{clade |label1='''A''' |1={{clade |1=[[Rhododendron subg. Rhododendron|''Rhododendron'']] |2=''[[Choniastrum]]'' }} |label2='''B''' |2=''[[Hymenanthes]]'' }} |label2='''C''' |2= ''[[Azaleastrum]]'' }} |2= ''Therorhodion'' }} }} }} displays as

Cladogram of Rhododendron (Goetsch et al. 2005)

A Rhododendron Choniastrum B Hymenanthes C Azaleastrum Therorhodion

Cladogram of Rhododendron (Goetsch et al. 2005)

A Rhododendron Choniastrum B Hymenanthes C Azaleastrum Therorhodion

Cladogram of Rhododendron (Goetsch et al. 2005)

A Rhododendron Choniastrum B Hymenanthes C Azaleastrum Therorhodion

Split lower line, e.g. (line 2) by nesting, e.g.
|label1= |1= |2={{clade |label1= |1= |label2= |2=

Tutorial

• 1. Frame

• 2. Add Stem

Rhododendron

• 3. Add first split

Rhododendron	A B

• 4. Divide first arm (A)

Rhododendron	A1 A2 B

• 5. Further split A1

Rhododendron	A1.1 A1.2 A2 B

5. Narcissus Ranunculaceae

|label1=Narcissus labels initial prong
Alternatively align with <center></center>

Subfamilies of Ranunculaceae

Ranuculaceae Glaucidoideae Hydrastidoideae Coptoideae Ranunculoideae Thalictroideae

Cladogram of Ranunculales families

Ranunculales Eupteleaceae Papaveraceae Lardizabalaceae Circaeasteraceae Menispermaceae Berberidaceae Ranunculaceae

{{Cladogram|title= ''Narcissus'' Cladogram (Graham and Barrett 2004)<ref name=Graham/> |cladogram={{clade| style=width:{{{width|400}}}px; |align= left |label1=''Narcissus'' |1={{clade |label1='''I''' subgen. ''Hermione'' |1= ''Aurelia'', ''Serotinii'', ''Tazettae'' |label2='''VI''' subg. ''Narcissus'' |2={{clade |label1='''II''' |1=''Jonquillae'' |label2= |2={{clade |label1='''III''' |1=''Apodanthi'' |2={{clade |label1='''IV''' |1=''Bulbicodium'' |label2='''V''' |2=''Pseudonarcissi'', ''Ganymedes'', ''Narcissus'', ''Tapeinanthus'' }} }} }} }} }}}} displays as

Narcissus Cladogram (Graham and Barrett 2004)

Narcissus I subgen. Hermione Aurelia, Serotinii, Tazettae VI subg. Narcissus II Jonquillae III Apodanthi IV Bulbicodium V Pseudonarcissi, Ganymedes, Narcissus, Tapeinanthus

Cladogram of Sempervivoideae tribes

Sempervivoideae Telephieae Umbilicieae Semperviveae Aeoniae Sedeae

6. Bracketing

• Template:Cladex (bracket)
• Template: Barlabel (label)

Step 1: Create cladogram with cladex instead of clade, in clades affexted

embryophytes	liverworts mosses hornworts vascular plants

Step 2: Add bracket with bar

• barbegin'n' = colour, where 'n'= leaf number (|n=) horizontal
• bar'n' = vertical
• barend = horizontal

embryophytes	liverworts mosses hornworts vascular plants

Step 3: Add label with Barlabel

• enclose in {{barlabel}}
• add size=total number of leaves (4)
• add at1=n, where n = leaf where label is places
• add bar'n'= colour
• add label'n'=label
• add cladogram=

embryophytes liverworts mosses hornworts vascular plants

bryophytes

see Template:Vascular plant phylogeny Note: requires ENTIRE cladogram within Barlabel. Add style to barlabel And note use of tabs to format

compare: Lilianae and Lilioid monocots, using thickness

1. Phylogenetic tree reflecting relationships based on molecular phylogenetic evidence. 2. The Dasypogonaceae represent an unplaced commelinid family, for which the order Dasypogonales has been suggested. 3. "Lilioids": Lilioid monocots. Lilianae Acorales Alismatales Petrosaviales Dioscoreales Pandanales Liliales Asparagales commelinids Dasypogonaceae Arecales Poales Zingiberales Commelinales

Lilioid monocots

notes

• can be embedded inside larger cladogram
• for headers and footers, enclose in {| |} - see Angiosperms
  • or use |title= and |caption = under {{cladogram, as in Phylogeny of Liliaceae, below

{{cladogram | title = | caption =

• Notes placed as |caption = displayed at bottom

Phylogeny of Liliaceae and related families in Liliales and Asparagales

Liliales AlstroemeriaceaeL ColchicaceaeL MelanthiaceaeL SmilacaceaeL Liliaceae sensu stricto Asparagales Orchidaceae HypoxidaceaeA Iridaceae Xanthorrhoeaceae sensu lato HemerocallidaceaeL XanthorrhoeaceaeL AsphodelaceaeL Alliaceae sensu lato AgapanthaceaeL AlliaceaeL Amaryllidaceae LaxmanniaceaeL AsparagaceaeL RuscaceaeL ThemidaceaeL HyacinthaceaeL AgavaceaeL/A commelinids

Phylogenetic tree reflecting relationships based on molecular phylogenetic evidence. L denotes families that have traditionally been placed in Liliaceae, A those formerly placed in Amaryllidaceae, itself sometimes treated as part of the Liliaceae. Agavaceae has been included in either of the two.

angiosperms Amborellales Nymphaeales Austrobaileyales magnoliids Chloranthales monocots Ceratophyllales eudicots

basal core

Useful to end with {{clear}} to avoid wraps

7. Illustrated (Nerine: es)

[[File:Purple Agapantha.JPG|80px]]

Testigo externo	Agapanthus
Amaryllideae	Amaryllidinae Amaryllis Boophoninae Boophone Crininae Crinum + Ammocharis + Cybistetes Strumariinae Crossyne        Strumaria               Hessea Brunsvigia Namaquanula Nerine

8. Collapsed cladogram

{| class="collapsible collapsed" style="width:100%; border:solid 1px #aaa" |- ! style="background:#F0F2F5" | Angiosperm classification |- | {{clade|style=font-size:80%;line-height:80% |1={{clade

9. Boxing with notes and colour

clade monocots : clade commelinids: order Arecales (palms) order Commelinales (spiderwort, water hyacinth) order Poales (grasses, rushes, bromeliads) order Zingiberales Griseb.(gingers, banana)

Cladogram: Phylogeny of the commelinids (APG IV) commelinids Arecales Poales Zingiberales Commelinales

10. Sublabel

Split long labels with |sublabel=

	A A very long label Rhododendron Choniastrum

	A Rhododendron A very long label Choniastrum

Sandbox

	Lycopodiophyta Polypodiophyta Gymnospermae Angiospermae

Blechnoideae	Blechnum Woodwardia Onoclea

Polypodiaceae	Didymochlaenoideae Hypodematioideae Dryopteridoideae Lomariopsidoideae Tectarioideae Oleandroideae Davallioideae Polypodioideae

Polypodiales	Cystodiaceae Saccolomataceae Lonchitidaceae Lindsaeaceae Dennstaedtiaceae Pteridaceae Polypodiaceae Aspleniaceae

Polypodiopsida	Equisetidae Ophioglossidae Marattiidae Polypodiidae

Polypodiales	Saccolomatineae Lindsaeineae Pteridiineae Dennstaedtiineae Aspleniineae Polypodiineae

Lindsaeineae	Cystodiaceae Lonchitidaceae Lindsaeaceae

Polypodiales

Saccolomatineae Saccolomataceae Lindsaeineae Cystodiaceae Lonchitidaceae Lindsaeaceae Pteridiineae Pteridaceae Dennstaedtiineae Dennstaedtiaceae eupolypods Aspleniineae or Aspleniaceae Cystopteridaceae or Cystopteridoideae Rhachidosoraceae or Rhachidosoroideae Diplaziopsidaceae or Diplaziopsidoideae Aspleniaceae or Asplenioideae Thelypteridaceae or Thelypteridoideae Woodsiaceae or Woodsioideae Blechnaceae or Blechnoideae Athyriaceae or Athyrioideae Polypodiineae or Polypodiaceae Didymochlaenaceae or Didymochlaenoideae Hypodematiaceae or Hypodematioideae Dryopteridaceae or Dryopteridoideae Lomariopsidaceae or Lomariopsidoideae Tectariaceae or Tectarioideae Oleandraceae or Oleandroideae Davalliaceae or Davallioideae Polypodiaceae or Polypodioideae

Infrafamilial cladistic structure of Saxifragales

Saxifragales Saxifragoids Saxifraga Heucheroids Leptarrhena Saniculiphyllum Boykinia Astilbe Heuchera Cascadia Darmera Peltoboykinia Micranthes

Theophrastoideae Samolus Theophrasta Neomezia Clavija Jacquinia Deherainia Votschia Bonellia

Phylogenetic relationships of Theophrastoideae

Crassulaceae

Cladogram of Crassulaceae and Sempervivoideae clades and divisions

Crassulaceae Crassuloideae Subfamily Kalanchoideae Subfamily Telephium Telephiae Tribe Umbiliceae Umbilicus Clade Phedimus/Rhodiola Clade Tribe Clade Sempervivum/Jovibarba (Tribe Semperviveae) Clade Aeonium (Tribe Aeoniae) Clade Sedeae Acre Clade Leucosedum Clade Tribe Subfamily Sempervivoideae Family

Note: Petrosedum clade is unplaced

Gymnosperms

Infrafamilial cladistic structure of Saxifragales

Saxifragales Saxifragoids Saxifraga Heucheroids Leptarrhena Saniculiphyllum Boykinia Astilbe Heuchera Cascadia Darmera Peltoboykinia Micranthes

Phylogeny of Gymnosperms

Gymnosperms Cycads Ginkgoaceae Pinaceae Gnetales Sciadopityaceae Araucariaceae Podocarpaceae Taxaceae (including Cephalotaxaceae) Cupressaceae s.l.