User:Jts1882/Phylogeny and taxonomy resources
This page is a set of links to useful phylogeny and taxonomy resources. These will include specialist sites on perticular groups of organisms, checklists, databases, and important scientific papers.
General
[edit]- IUCN Red List of Threatened Species
- Catalogue of Life (CoL): home and treeview
- List of source databases: https://www.catalogueoflife.org/data/source-datasets
- Catalog of Life China Taxonomy
- Integrated Taxonomic Information System (ITIS) Hierarchy
- Interim Register of Marine and Nonmarine Genera (IRMNG) Taxon Tree
- Taxonomicon – a selection of phylogenetic trees based on particular sources, e.g. MSW, McKenne Bell, as well as the Species 2000 taxonomy.
- Paleobiology database: taxon search | alternative output
- Fossilworks: home | taxon search (dead as of April 2024)
- REPAD: The Recently Extinct Plants and Animals Database Contains 11,805 (sub)species (as of April 2024).
- Wikispecies resources: species:Help:Project_sources and species:User:Tony_1212/default_treatments_by_group
Viruses
[edit]- International Committee on Taxonomy of Viruses (ICTV)
- ICTV Taxonomy (interactive list from realm to species)
- ICTV Master Species Lists (excel files; latest [2020.v1)
Bacteria and Archaea
[edit]- GTDB release 07-RS207 (8th April 2022).
- "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
- "bac120_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
- "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.</ref>
- Bergey's Manual of Systematic Bacteriology https://www.bergeys.org/publications/
- LPSN - List of Prokaryotic names with Standing in Nomenclature: home | classification | old version
Eukaryotes
[edit]- Ruggiero scheme:
- Ruggiero et al (2015) A Higher Level Classification of All Living Organisms.[1]
- Adl scheme:
- Books and other proposals
- Philippe Silar's Protistes Eucaryotes.[6]
- Handbook of the Protists, Second Edition. (ed: John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits) [7]
- Tedersoo's Proposal for practical multi-kingdom classification of eukaryotes based on monophyly and comparable divergence time criteria (was this ever published?)
- Databases:
- UniEuk Universal taxonomic framework: eukmap home | eukmap interactive taxonomy
- mikrotax.org: pforams@mikrotax (foraminifera)] | Nannotax (coccolithophores) | Cenozoic radiolaria | acritarchs
References
- ^ Ruggiero, Michael A.; Gordon, Dennis P.; Orrell, Thomas M.; Bailly, Nicolas; Bourgoin, Thierry; Brusca, Richard C.; Cavalier-Smith, Thomas; Guiry, Michael D.; Kirk, Paul M. (2015). "A Higher Level Classification of All Living Organisms". PLOS ONE. 10 (4): e0119248. doi:10.1371/journal.pone.0119248. ISSN 1932-6203.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukeš, Julius; Schoch, Conrad L.; Smirnov, Alexey; Agatha, Sabine; Berney, Cedric; Brown, Matthew W.; Burki, Fabien; Cárdenas, Paco; Čepička, Ivan; Chistyakova, Ludmila; del Campo, Javier; Dunthorn, Micah; Edvardsen, Bente; Eglit, Yana; Guillou, Laure; Hampl, Vladimír; Heiss, Aaron A.; Hoppenrath, Mona; James, Timothy Y.; Karpov, Sergey; Kim, Eunsoo; Kolisko, Martin; Kudryavtsev, Alexander; Lahr, Daniel J. G.; Lara, Enrique; Le Gall, Line; Lynn, Denis H.; Mann, David G.; Massana i Molera, Ramon; Mitchell, Edward A. D.; Morrow, Christine; Park, Jong Soo; Pawlowski, Jan W.; Powell, Martha J.; Richter, Daniel J.; Rueckert, Sonja; Shadwick, Lora; Shimano, Satoshi; Spiegel, Frederick W.; Torruella i Cortes, Guifré; Youssef, Noha; Zlatogursky, Vasily; Zhang, Qianqian (2018). "Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes". Journal of Eukaryotic Microbiology. doi:10.1111/jeu.12691. ISSN 1066-5234.
- ^ Adl, Sina M.; Simpson, Alastair G. B.; Lane, Christopher E.; Lukeš, Julius; Bass, David; Bowser, Samuel S.; Brown, Matthew W.; Burki, Fabien; Dunthorn, Micah; Hampl, Vladimir; Heiss, Aaron; Hoppenrath, Mona; Lara, Enrique; le Gall, Line; Lynn, Denis H.; McManus, Hilary; Mitchell, Edward A. D.; Mozley-Stanridge, Sharon E.; Parfrey, Laura W.; Pawlowski, Jan; Rueckert, Sonja; Shadwick, Laura; Schoch, Conrad L.; Smirnov, Alexey; Spiegel, Frederick W. (2012). "The Revised Classification of Eukaryotes". Journal of Eukaryotic Microbiology. 59 (5): 429–514. doi:10.1111/j.1550-7408.2012.00644.x. ISSN 1066-5234.
- ^ Adl, Sina M.; Simpson, Alastair G. B.; Farmer, Mark A.; Andersen, Robert A.; Anderson, O. Roger; Barta, John R.; Bowser, Samuel S.; Brugerolle, Guy; Fensome, Robert A.; Fredericq, Suzanne; James, Timothy Y.; Karpov, Sergei; Kugrens, Paul; Krug, John; Lane, Christopher E.; Lewis, Louise A.; Lodge, Jean; Lynn, Denis H.; Mann, David G.; Mccourt, Richard M.; Mendoza, Leonel; Moestrup, Ojvind; Mozley-Standridge, Sharon E.; Nerad, Thomas A.; Shearer, Carol A.; Smirnov, Alexey V.; Spiegel, Frederick W.; Taylor, Max F. J. R. (2005). "The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists". The Journal of Eukaryotic Microbiology. 52 (5): 399–451. doi:10.1111/j.1550-7408.2005.00053.x. ISSN 1066-5234.
- ^ Adl, Sina M.; Leander, Brian S.; Simpson, Alastair G. B.; Archibald, John M.; Anderson, O. Roger.; Bass, David; Bowser, Samuel S.; Brugerolle, Guy; Farmer, Mark A.; Karpov, Sergey; Kolisko, Martin; Lane, Christopher E.; Lodge, Deborah J.; Mann, David G.; Meisterfeld, Ralf; Mendoza, Leonel; Moestrup, Øjvind; Mozley-Standridge, Sharon E.; Smirnov, Alexey V.; Spiegel, Frederick; Collins, Tim; Sullivan, Jack (2007). "Diversity, Nomenclature, and Taxonomy of Protists". Systematic Biology. 56 (4): 684–689. doi:10.1080/10635150701494127. ISSN 1076-836X.
- ^ Silar, Philippe (2016). Protistes Eucaryotes: Origine, Evolution et Biologie des Microbes Eucaryotes. pp. 1–462. ISBN 978-2-9555841-0-1.
- ^ Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H., eds. (2017). Handbook of the Protists (2nd ed.). p. 1662. ISBN 331928147X.
Fungi
[edit]- Outline of Fungi: https://www.outlineoffungi.org/outline.php (based on Wijayawardene et al., 2020; pdf)
- MycoBank: https://www.mycobank.org/
- Kew fungi resources
- Index Fungorum: search page
- Species Fungorum (part of Species 2000): search page
Plants
[edit]- AlgaeBase; Taxonomy browser
- Bryophytes
- Goffinet and Buck's Classification of extant moss genera
- The Bryophyte Nomenclator (Edited by John C. Brinda and John J. Atwood)
- Villarreal and Goffinet's Phylogenetic arrangement of hornwort genera
- Söderström et al (2016) World checklist of hornworts and liverworts
- British mosses (DELTA database)
- "Pteridophytes"
- The Pteridophyte Phylogeny Group[1]
- World Ferns - the updated version of Michael Hassler's Checklist of Ferns and Lycophytes of the World
- Tropicos Ferns & Lycophytes (family, generic lists)
- British ferns (DELTA database)
- Kew resources
- Plants of the World Online (POWO)
- Accepted families: http://www.plantsoftheworldonline.org/?f=family_f%2Caccepted_names&page.size=480
- Python access to API: https://github.com/RBGKew/pykew
- World Checklist of Selected Plant Families (WCSP) [superceded by WCVP after 2021]
- World Checklist of Vascular Plants
- browse treeview (family-genus-species) via ChecklistBank (includes families that are not used by CoL)
- Govaerts et al 2021
- Vascular Plant Families and Genera R. K. Brummitt 1992 (no longer public; archived version)
- Angiosperm Tree of Life
- Plants of the World Online (POWO)
- Mobot resources
- World Flora Online (WFO)
- Classification: interactive tree
- Interactive list interface (Dec 2023 version): https://list.worldfloraonline.org/browser.php?id=wfo-4100001250-2023-12 (API)
- Browse WFO Plant List: https://wfoplantlist.org/
- Tropicos
- Angiosperm Phylogeny Website
- eFloras: home/index
- Flora of North America | Family list | (also at floranorthamerica.org)
- Flora of China | Family list | (pdfs by family available at flora.huh.harvard.edu/china)
- A Grammatical Dictionary of Botanical Latin
- World Flora Online (WFO)
- Michael Hassler's World Plants
- Angiosperm Phylogeny Group.
- Phylogeny posters by Cole et al: Bryophytes, Tracheophytes, Angiosperms
- Bryophyte Phylogeny Poster: BPP-2021-E-V1a.pdf
- Pteridophyte Phylogeny Poster (PtPP) – The Families of LYCOPHYTES and FERNS: PtPP-E-2022-V1d.pdf
- Tracheophyte Phylogeny Poster: TPP-E-2020.pdf
- Angiosperm Phylogeny Poster: APP-E-2020.pdf | APP-E-2022-PPA-V1-1.pdf
- The International Fossil Plant Names Index (IFPNI). Global registry of scientific names of fossil organisms covered by the International Code of Nomenclature for Algae, Fungi, and Plants and the International Code of Zoological Nomenclature
- Other
- Legume treeview (LPWG via WCVP)
- www.compositae.org
- Global Compositae Database: Asteroideae | Search | Taxon Tree (also available via WoRMS)
- Download of Systematics, Evolution and Biogeography of the Compositae Funk, V., Susanna, A, Stuessy, T Y R. Bayer (eds.)
- Boraginales Working Group (myspecies.info): treeview | Posters
- Encyclopaedia of Bromeliads Version 4 (2018)
- Various DELTA databases: https://www.delta-intkey.com/www/data.htm
- Brazilian flora databases: Brazilian Flora 2020 WebService | Reflora Search | CNCFlora WebServices | CNCFlora Portal | Services home
- On Wikipedia
References
- ^ PPG I (2016). "A community-derived classification for extant lycophytes and ferns". Journal of Systematics and Evolution. 54 (6): 563–603. doi:10.1111/jse.12229. ISSN 1674-4918.
Animals
[edit]- Gonzalo Giribet, Gregory D. Edgecombe (3 Mar 2020) The Invertebrate Tree of Life Princeton University Press, 608 pages [1]
- Consensus phylogeny (googlebooks)
- Animal Biodiversity series (Zhang 2011, 2013): 2011 contents | 2013 contents | Googlebooks of 2011 volume
References
- ^ Giribet, G.; Edgecombe, G.D. (2020). The Invertebrate Tree of Life. Princeton University Press. p. 21. ISBN 978-0-6911-7025-1. Retrieved 27 May 2023.
Invertebrates
[edit]- General
- World Register of Marine Species (WoRMS): Advanced search | databases | Taxon tree (very good for some marine groups, but limited for terrestrial groups)
- Bugguide (many arthropod groups, but US and Canada only)
- Annelids
Arthropods
[edit]- Millipedes and centipedes (Myriapoda)
- ChiloBase 2.0: A World Catalogue of Centipedes (Chilopoda) for the Web (used by CoL)
- MilliBase (Diplopoda; millipedes) (via WoRMS) (used by CoL)
- World Database of littoral Myriapoda (via WoRMS)
- Arachnids and allies (Chelicerata)
- World Arachnida Catalog (including WSC)
- Amblypygi | Aranae (=WSC)| Palpigradi | Pseudoscorpiones | Ricinulei | Schizomida | Solifugae | Uropygi (not currently used by CoL)
- World Spider Catalog: Families | number of genera and species per family: statistics |checklistbank
- Spider DELTA database
- The Scorpion Files: Intro and Family listings index | checklistbank
- World Catalogue of Opiliones (The complete taxonomy of world harvestmen) | checklistbank
- Pycnobase: World Pycnogonida Database (via WoRMS) (used by CoL)
- World Arachnida Catalog (including WSC)
- Crustaceans (mainly covered by WoRMS projects)
- World of Copepods Database (viaWoRMS) (used by CoL)
- World Ostracoda Database (via WoRMS) (used by CoL)
- World List of Mystacocarida (via WoRMS) (used by CoL)
- World Ostracoda Database (via WoRMS) (used by CoL)
- World List of Brachypoda (Cephalocarida) (via WoRMS) (used by CoL)
- World Remipedia Database (via WoRMS) (used by CoL)
- Malacostraca
- World Amphipoda Database (part of Peracarida<Eumalacostraca) (via WoRMS) (used by CoL)
- World Marine, Freshwater and Terrestrial Isopod Crustaceans database (part of Peracarida<Eumalacostraca)(via WoRMS) (used by CoL)
- World List of Bochusacea (part of Peracarida<Eumalacostraca) (via WoRMS) (used by [1])
- World Cumacea Database (part of Peracarida<Eumalacostraca) (via WoRMS) (used by CoL)
- World List of Tanaidacea (part of Peracarida<Eumalacostraca) (via WoRMS) (used by CoL)
- World List of Thermosbaenacea (part of Peracarida<Eumalacostraca) (via WoRMS) (used by CoL)
- World List of Lophogastrida, Stygiomysida and Mysida ("Mysidacea", parts of Peracarida<Eumalacostraca) (via WoRMS)
- World List of Leptostraca (Phyllocarida<Malacostraca) (via WoRMS (used by CoL)
- World Euphausiacea Database (part of Eucarida<Eumalacostraca) (via WoRMS) (used by CoL)
- World List of marine Brachyura (Decapoda<Eucarida) (via WORMS) (used by CoL)
- DecaNet (World List of Decapoda): treeview (via WoRMS) (not currently used by CoL)
- Hexapoda (see insects section below)
Insects
[edit]- General
- Nomina circumscribentia insectorum (Kluge N.J. 2004-2017)
- Species Files Databases
- Polyneoptera (all orders covered)
- Zoraptera Species File (P12753)
- Dermaptera Species File (P12750)
- Plecoptera Species File (P12770)
- Orthoptera Species File (P12785)
- Grylloblattodea Species File (P12768)
- Mantophasmatodea Species File (P12769)
- Embioptera Species File (P12751)
- Phasmida Species File (P12819)
- Mantodea Species File (pending)
- Cockroach Species File (P12817)
- Isoptera Species File (P12752)
- Psocodea Species File (P12820)
- Hemiptera (partial coverage)
- Aphid Species File (P12767)
- Coleorrhyncha Species File (P12771)
- Coreoidea Species File (pending)
- Lygaeoidea Species File (P12818)
- 3i World Auchenorrhyncha Database (P12057)
- Selected groups
- Early diverging orders: ?
- Polyneoptera:
- All orders are covered by Species File databases (see box to right)
- Psocodea
- Paraneoptera
- The Flow databases cover various hemipteran groups
- Holometabola
- See below for resources covering Coleoptera, Diptera, Lepidoptera and some Hymenopteran groups
- World Strepsiptera Database (via WoRMS) (used by CoL)
Holometabola
[edit]- Beetles (Coleoptera)
- World Scarabaeidae Database: accessible through CoL (info | interactive tree)
- CarabCat: Ground Beetles of the World: direct database access (not intuitive; corrupted link as of 22 July 2024) | access though CoL (recommend by CarabCat)
- UK Beetles: home | classification/checklist | Family guide
- Flies (Diptera)
- Systema Dipterorum (www.diptera.org). A Biosystematic Database of World Diptera www.diptera.org: Family classification
- The (new) Diptera Site: https://diptera.myspecies.info: Diptera Classification (interactive tree)
- Other myspecies.info sites: Lonchaeidae | Mosquito Taxonomic Inventory (Culicidae) | Fungus Gnats Online (Sciaroidea)
- Flytree Project: home | Family supertree | archived higher-level phylogeny | archived supertree (slightly better resolution)
- Catalogue of the Craneflies of the World (Diptera, Tipuloidea: Pediciidae, Limoniidae, Cylindrotomidae, Tipulidae)
- Global Lepidoptera Index (checklistbank)
Families that have seen significant updates since Lepindex:
- Micropterigoidea: Micropterigidae
- Eriocranioidea: Eriocraniidae
- Agathiphagoidea: Agathiphagidae
- Heterobathmioidea: Heterobathmiidae
- Neopseustoidea: Acanthopteroctetidae, Aenigmatineidae, Neopseustidae
- Lophocoronoidea: Lophocoronidae
- Hepialoidea: Anomosetidae, Mnesarchaeidae, Neotheoridae, Palaeosetidae, Prototheoridae
- Andesianoidea: Andesianidae
- Adeloidea: Adelidae, Cecidosidae, Heliozelidae, Incurvariidae, Prodoxidae, Tridentaformidae
- Tischeroidea: Tischeriidae
- Palaephatoidea: Palaephatidae
- Tineoidea: Psychidae
- Yponomeutoidea: Argyresthiidae, Attevidae, Praydidae, Scythropiidae, Tonzidae, Yponomeutidae
- Simaethistoidea: Simaethistidae
- Gelechioidea: Autostichidae, Elachistinae (Elachistidae), Lecithoceridae
- Drepanoidea: Thyatiridae
- Geometroidea: Pseudobistonidae
- Noctuoidea: Oenosandridae, Scranciidae, Notodontidae, Lithosiini (Erebidae: Arctiinae), Micronoctuini (Erebidae: Hypenodinae
- Butterflies and moths (Lepidoptera)
- NHM resources (global)
- Butterflies and Moths of the World (NHM) | Classification
- Lepindex (Global Lepidoptera Names Index) – "a digitised and updated version of the unique index card archive to the scientific names of the living and fossil butterflies and moths of the world at the Natural History Museum (London)" (last update in 2012).| LepIndex ID (P3064)
- Global Lepidoptera Index: CoL hosted – revised dataset based on LepIndex.| CoL tree | checklistbank
- According to the CoL dataset record, "large sections of the dataset are outdated and contain errors or inaccuracies (particularly relating to changes in higher classification and incomplete data on historical combinations for each epithet)".
- "LepIndex has now been imported into TaxonWorks and is maintained there as an online curated resource. Significant updates have been made to some families" (see box to right)
- "The Global Lepidoptera Index is not at present actively maintained for the following Lepidoptera groups since these are maintained in other public datasets" (see list below with links to checkkistbank and date of update):
- Hepialidae: A Revised World Catalogue of Ghost Moths (2024)
- Nepticulidae, Opostegidae: Nepticulidae and Opostegidae of the World (2016)
- Tineidae: Global taxonomic database of Tineidae (Lepidoptera) (2011)
- Gracillariidae: Global Taxonomic Database of Gracillariidae (2024) https://www.gracillariidae.net/
- Gelechiidae: Catalogue of World Gelechiidae (2024)
- Alucitidae: Catalogue of the Alucitoidea of the World (2024) https://alucitoidea.hobern.net/
- Pterophoridae, Macropiratidae: Catalogue of the Pterophoroidea of the World https://pterophoroidea.hobern.net
- Tortricidae: World Catalogue of the Tortricidae (2018) http://tortricidae.com/
- Sesiidae: Checklist of the Sesiidae of the world (2024) http://www.sesiidae.net/Checklst.htm
- Papilionidae, Pieridae: Global Butterfly Information System (2013)
- Geometridae: Online Taxonomic Facility of Geometridae (2024) https://geometroidea.smns-bw.org/introduction
- Other sites on taxonomic groups
- www.nymphalidae.net:
- Global Information System on Pyraloidea (GlobIZ) | classification | search
- Charaxes.be (Vingerhoedt)
- Sphingidae Taxonomic Inventory (hawkmoths) (at myspecies.info; successor site to short-lived CATE Sphinidae) | taxonomy treeview
- Regional resources
- Afromoths (Belgian Biodiversity Platform): 131 families, e.g. Erebidae | checklistbank
- Afrotropical butterflies:
- Moths and Butterflies of Europe and North Africa (MaBENA): European macro Lepidoptera tree | Wikidata: Moths and Butterflies of Europe and North Africa ID (P9608)
- Butterflies and Moths of North America (BaMoNA): taxonomy | Wikidata: Butterflies and Moths of North America ID (P3398)
- Lepidoptera Mundi (formerly European Butterflies and Moths). Has comprehensive coverage of European species. It has been recently been expanded to cover other regions. Can find species restricted to continent or country. [Note: the site has been black listed since 2018 (see here and here) due to the site owner persistently adding external links (see ANI discussion and mass deletion discussion). The link is
https://lepidoptera.eu/start/en]
- NHM resources (global)
- Wasps, ants and bees (Hymenoptera)
- Universal Chalcidoidea Database
- Catalog of Sphecidae (covers families Heterogynaidae, Ampulicidae, Sphecidae, and Crabronidae)
- Ants
- Antwiki: Formicidae | Phylogeny of Formicidae (with Newick) | List of Genera | Phylogeny of Myrmicinae
- http://www.antcat.org/ (Barry Bolton)
- https://www.antweb.org/ (free licenced images)
- http://antbase.org/ (not updated)
- http://www.antbase.net/ (images)
- https://antmaps.org/? (interactive distribution map: by subfamily, genus, etc)
Species Files and FLOW databases (Polyneoptera and Paraneoptera)
[edit]- Species File databases: a number of taxonomic databases dealing with insect orders in Polyneoptera and Paraneoptera (see table below)
- index of Species Files databases (note species files are in the process of being updated)
- sfg-taxonpages on Github
- List of Species File databases used by CoL
- SF Chrysididae (Hymenoptera): http://chrysididae.speciesfile.org (old version) | preview of Taxonworks site | checklistbank
- FLOW databases (selected parts of Hemiptera):
- FLOW Fulgoromorpha Lists On the Web (Fulgoroidea, planthoppers): Family list | Classification [Wikidata: FLOW ID (P6096)]
- White Files (Aleyrodoidea, whiteflies): Family list [Wikidata: The White-files species ID (P6347)]
- Psyl'List (Psylloiidea, jumping plant lice): Family list [Wikidata: Psyl'list species ID (P6376)]
- COOL (Cercopoidea, froghoppers): Family list [Wikidata: COOL species ID (P6408)]
- Others (missing or not currently functioning): MBB (Coleorrhyncha, moss bugs), Lace Bug db (Tingidae, lace bugs), Flatbug db (Aradidae, flatbugs)
- Other Hemiptera
- ScaleNet (scale insects, Coocoidea) : Family list [Wikidata: ScaleNet ID (P6516)]
Vertebrates
[edit]Fish
[edit]- Fishbase (main page with search): classification list (with stats) | classification tree (interactibe)
- Eschmeyer's Catalog of Fishes
- FishWise Pro
- Fishes of the World by Joseph S. Nelson (5th edition) (dead site: archived page)
- Detailed classification of all fishes (dead site: archived file)
- Fish phylogenies
- deepfin.org Phylogenetic Classification of Bony Fishes (site dead)
- Latest version: Classification v.4 (Betancur et al 2017)
- Archived pages: home | Classification v.1 | Classification v.2 | Classification v.3 |
- Fish Tree of Life – interactive taxonomy (bony fishes)
- Chondrichthyan Tree of Life (sharks and rays; interactive)
- VertLife sharks (Stein et al, 2018[1])
- deepfin.org Phylogenetic Classification of Bony Fishes (site dead)
- Other links
- The ETYFish Project: Fish Name Etymology Database © Christopher Scharpf and Kenneth J. Lazara
- Rays of the World (2022, Last, P. R., editor): Googlebooks (partial preview) | Internet Archive (whole book, hourly loan)
- Chondrichthyan Tree of Life (intractive species level phylogeny)
References
- ^ Stein, R. William; Mull, Christopher G.; Kuhn, Tyler S.; Aschliman,, Neil C.; Davidson,, Lindsay N. K.; Joy,, Jeffrey B.; Smith, Gordon J.; Dulvy, Nicholas K.; Mooers, Arne O. (2018). "Global priorities for conserving the evolutionary history of sharks, rays and chimaeras". Nature Ecology & Evolution (2): 288–298.
{{cite journal}}: CS1 maint: extra punctuation (link)
Amphibia
[edit]- Amphibian Species of the World (ASW6.2)
- Amphibiaweb Family Taxonomy
- Useful links on Wikipedia:
- Project page: Wikipedia:WikiProject_Amphibians_and_Reptiles#Taxonomy
- Discussion of taxonomy used by Amphibian and Reptiles WikiProject: Revamp_of_WP:AAR
- My amphibia resource page: User:Jts1882/phylogeny/Amphibia
Reptiles
[edit]- Reptile database
- Classification: Higher Taxa in Extant Reptiles
- Specific groups
- Turtles: Turtles of the World Checklist | Thompson et al (2020) (phylogeny) | Joyce et al (2021) (phylocode)
- RepFocus - A Survey of the Reptiles of the World
- Wikipedia
- My resource pages: Turtles | Squamata
- Phylogeny templates: {{Phylogeny/Squamata}} | {{Phylogeny/Snakes}} |
Birds
[edit]- IOC World Bird List version 14.1
- Orders of Birds
- Family Index
- Working Group Avian Checklists (WGAC; last update June 2022)
- checklistbank (v2024-06-03)
- Clements/eBird/Birds of the World
- Birds of the World – incorporating Cornell Lab resources (taxonomy, checklist) and content from the now defunct HBW Alive
- Species list
- Explore BOW Taxonomy: illustrated lists of orders, families and species | text listing (with subspecies) | JSON via API
- eBird taxonomy
- Clement's checklist: Download checklist | Overview (2023) | Updates and Corrections (2023) | checklistbank (2021-08-28)
- Overview of changes and higher taxonomy (including family list): index of updates by year | 2019 | 2021 | 2022 | 2023
- All About Birds (600+ North American species): Browse by taxonomy
- James Jobling'sThe Key to Scientific Names: Introduction | Search
- Birds of the World – incorporating Cornell Lab resources (taxonomy, checklist) and content from the now defunct HBW Alive
- HBW/Birdlife
- Handbook of Birds of the World (HBW) 16 volumes
- HBW and BirdLife Taxonomic Checklist (currently v8.1) | checklistbank (version 6.0b / 2022-07)
- Howard and Moore Complete Checklist of Birds of the World
- Avibase
- Search by family (classification follows Howard and Moore for extant families)
- Taxon tree (higher taxa down to tribe; option for fossil taxa)
- Compare checklists (compare different checklists and versions)
- Other
- Towards a global checklist: Working Group Avian Checklists
- American Ornithological Society's (AOS) Checklist of North and Middle American Birds (hierarchical list or csv file)
- SACC classification and checklist: https://www.museum.lsu.edu/~Remsen/SACCBaseline.htm
- John Boyd's Taxonomy in Flux
- Comparison with Sibley system: http://jboyd.net/Taxo/sam1.html
- Don Roberson's Bird Families of the World (useful summaries of family reorganisation, e.g. [http://creagrus.home.montereybay.com/sylvid-old.html Sylviidae)
- Bird Families of the World (useful comparisons on Taxonomy page)
- Bird phylogenies on https://www.bird-phylogeny.de (higher phylogeny or orders)
- Bird Taxonomy and Nomenclature at BirdForum
- Zoonomen (nomenclature resource)
- Taxonomicon: Sibley & Monroe (1993)
- Archived list from Distribution and Taxonomy of Birds of the World (Sibley and Monroe, 1990): Non-Passeriformes sequence, Passeriformes sequence.
- Livezey and Zusi (2007) classification via taxonomicon
- Wikiproject Birds:
- Wikiproject resource page: WP:WikiProject_Birds/References
- WikiProject_Birds: New_Phylogeny and Higher-order_relationships
- WikiProject_Birds: HBW_merging_into_Cornell_Lab and HBW_Alive_closing
- Talk:Passerine#Family listing and Talk:Passerine#Phylogeny
- My bird subpages and phylogeny templates
- Comparison of phylogenetic studies: supraordinal relationships, passerine families and subordinal relationships
- Template:Phylogeny/Passerines
Mammals
[edit]- ASM Mammal Diversity Database
- Version v1.12.1 (released 30 Jan 2024) | treeview
- New version in development on github: https://mammaldiversity.github.io/taxa.html
- Github: https://github.com/mammaldiversity/mammaldiversity.github.io | fork
- Mammal Species of the World (Wilson & Reeder, 2005) (MSW3):
- Google books
- Online database (Bucknell; slight variations from book)
- Archive of Smithsonian online version.
- Taxonomicon tree (follows book classification)
- http://hesperomys.com/ (taxa and names)
- Handbook of Mammals of the World (HMW)
- Nine volumes: 1. Carnivores (2009) | 2. Hoofed Mammals (2011) | 3. Primates (2013) | 4. Sea Mammals (2014) | 5. Monotremes and Marsupials (2015) | 6. Lagomorphs and Rodents I (2016) | 7. Rodents II (2017) | 8. Insectivores, Sloths and Colugos (2018) | 9. Bats (2019)
- Illustrated Checklist of the Mammals of the World (2020) | Introduction
- McKenna-Bell classification: Googlebooks | Taxonomicon
- Comparison with "traditional" classification: https://www.utep.edu/leb/classification/table1a.htm
- Mammal classifications via Taxonomicon: Simpson (1945) |McKenna (1975) | McKenna & Bell (1997) | Wilson & Reeder (1993) | Wilson & Reeder (2005; MSW3)
- Subgroups
- IUCN mammal specialist groups: https://www.iucn.org/ssc-groups/mammals
- Cats – Canids – Small carnivores – Otters
- Xenarthrans – Primates – Caprinae – Cattle – Antelopes –Small mammals
- Ultimate Ungulates list following the Grubb-Graves splits: http://www.ultimateungulate.com/NewTaxonomy.html
- An analysis of the G&G splits: https://www.zoochat.com/community/threads/ungulate-taxonomy-revisited-the-evidence-for-the-splits-of-g-g.467230/
- SMM lists for cetaceans, pinnepids and other marine mammals: https://marinemammalscience.org/species-information/list-marine-mammal-species-subspecies/
- https://batnames.org/. Bat Species of the World: A taxonomic and geographic database. (Nancy B. Simmons and Andrea L. Cirranello, 2018).
- IUCN mammal specialist groups: https://www.iucn.org/ssc-groups/mammals
Archives of MSW3 at the Smithsonian
[edit]Archive of taxonomic browser on Smithsonian version of MSW3: Mammalia (captured 20110526)[1]
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References
- ^ Wilson, Don E.; Reeder, DeeAnn M. "Mammal Species of the World". Smithsonian: National Museum of Natural History. Archived from the original on 26 May 2011.