User:AzulRover/Coiled coil/Bibliography

You will be compiling your bibliography and creating an outline of the changes you will make in this sandbox.

Bibliography

As you gather the sources for your Wikipedia contribution, think about the following:

Is the source from a reliable publication?
- Reliable publications include established newspapers, academic journals and books, textbooks, and other published sources with reputations for accuracy and fact-checking.
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Is the source independent of the subject?
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Is the source primary or secondary?
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- Wikipedia allows limited use of primary sources, but typically only for straightforward, descriptive statements of facts, and only if they are published and verifiable without requiring specialized knowledge.
- Secondary sources should be the main basis for a biography on Wikipedia.
If you're working on a topic related to medicine or psychology, ensure that your sources follow these special guidelines.
If you're creating a new article, consider the following:
- Ensure that your topic meets Wikipedia's notability guidelines.
- In order for a topic to meet the notability requirement, you must be able to identify 2-3 sources that are reliable, verifiable, and independent of the subject you're writing about.
- Finding sufficient sources to establish notability can be especially hard when writing about people or organizations.
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Bibliography

Edit this section to compile the bibliography for your Wikipedia assignment. Add the name and/or notes about what each source covers, then use the "Cite" button to generate the citation for that source.

Every single one is a scientific article. Some are review articles. I believe all are reliable, especially considering that the majority of information gathered from each article cited numerous other articles for said information and/or the information in each article was found in another one of my sources or would-be sources.

2, 3, 12, 16-21, 25-28, 30-38

Szczepaniak, et al.^[1]

---Gives an overview of coiled coil motifs.

Walshaw, John & Woolfson, Derek N.^[2]

---A tool to predict coiled coil motifs in proteins. Mentions several other similar tools.

Rose, et al.^[3]

---Provides various examples of roles that coiled-coils have in cell function.

Eckert DM, Kim PS.^[4]

---Mentions gp120 binding to CD4 receptor.

Chen, Yu A & Scheller, Richard H.^[5]

---Mentions HR1 and HR2 coiling.

Truebestein, Linda & Leonard, Thomas A.^[6]

---Mentions derived inhibitors.

Linstedt, et al.^[7]

---Mentions chimeras of HR1-derived peptides.

Witkos, Tomasz M & Lowe, Martin.^[8]

---Information on the SNARE complex.

Jeyaprakash, et al.^[9]

---Mentions molecular spacers.

Cabezon, et al.^[10]

---Mentions other molecular spacers in membrane tethering.

Park, Won Min.^[11]

---Information on golgins.

Lapenta, et al.^[12]

---Information on Ska complex.

Bromley, et al.^[13]

---Information on oligomerization.

Harbury, et al.^[14]

---Information on nanostructures.

Harbury, et al.^[15]

---Diagrams given that are thankfully under a Creative Commons license.

Woolfson, DN.^[16]

---Many applications hypothesized for biomedical applications.

Berwick, et al.^[17]

---Drug delivery ideas set forth. 34

Jorgensen & Chmielewski.^[18]

---Description of use for storing and transporting drugs.

McFarlane, et al.^[19]

---Ideas on use in drug delivery.

Schroeder, et al.^[20]

---Ideas on use in increasing vaccine effectiveness.

Park, Won Min.^[21]

---Nanostructures are explored somewhat.

Dexter, et al.^[22]

---Matrix using coiled-coil motifs described.

Examples:

Luke, Learie. 2007. Identity and secession in the Caribbean: Tobago versus Trinidad, 1889–1980 Kingston, Jamaica: University of the West Indies Press.
- This is a book published by a university press, so it should be a reliable source. It also covers the topic in some depth, so it's helpful in establishing notability.
Galeano, Gloria; Bernal, Rodrigo (2013-11-08). "Sabinaria , a new genus of palms (Cryosophileae, Coryphoideae, Arecaceae) from the Colombia-Panama border". Phytotaxa.
- This is a peer-reviewed scientific journal, so it should be a reliable source. It covers the topic in some depth, so it's helpful in establishing notability.
Baker, William J.; Dransfield, John (2016). "Beyond Genera Palmarum: progress and prospects in palm systematics". Botanical Journal of the Linnean Society.
- This is a peer-reviewed scientific journal, so it should be a reliable source for a specific fact. Since it only dedicates a few sentences to the topic, it can't be used to establish notability.

References

^ Szczepaniak, Krzysztof; Bukala, Adriana; da Silva Neto, Antonio Marinho; Ludwiczak, Jan; Dunin-Horkawicz, Stanislaw (2021-04-01). Elofsson, Arne (ed.). "A library of coiled-coil domains: from regular bundles to peculiar twists". Bioinformatics. 36 (22–23): 5368–5376. doi:10.1093/bioinformatics/btaa1041. ISSN 1367-4803.
^ Walshaw, John; Woolfson, Derek N (2001-04). "SOCKET: a program for identifying and analysing coiled-coil motifs within protein structures11Edited by J. Thornton". Journal of Molecular Biology. 307 (5): 1427–1450. doi:10.1006/jmbi.2001.4545. {{cite journal}}: Check date values in: |date= (help)
^ Rose, Annkatrin; Schraegle, Shannon J; Stahlberg, Eric A; Meier, Iris (2005-12). "Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control". BMC Evolutionary Biology. 5 (1). doi:10.1186/1471-2148-5-66. ISSN 1471-2148. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)
^ Eckert, Debra M.; Kim, Peter S. (2001-09-25). "Design of potent inhibitors of HIV-1 entry from the gp41 N-peptide region". Proceedings of the National Academy of Sciences. 98 (20): 11187–11192. doi:10.1073/pnas.201392898. ISSN 0027-8424.
^ Chen, Yu A.; Scheller, Richard H. (2001-02). "SNARE-mediated membrane fusion". Nature Reviews Molecular Cell Biology. 2 (2): 98–106. doi:10.1038/35052017. ISSN 1471-0072. {{cite journal}}: Check date values in: |date= (help)
^ Truebestein, Linda; Leonard, Thomas A. (2016-09). "Coiled‐coils: The long and short of it". BioEssays. 38 (9): 903–916. doi:10.1002/bies.201600062. ISSN 0265-9247. {{cite journal}}: Check date values in: |date= (help)
^ Linstedt, Adam D.; Jesch, Stephen A.; Mehta, Amy; Lee, Tina H.; Garcia-Mata, Rafael; Nelson, David S.; Sztul, Elizabeth (2000-04). "Binding Relationships of Membrane Tethering Components". Journal of Biological Chemistry. 275 (14): 10196–10201. doi:10.1074/jbc.275.14.10196. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)
^ Witkos, Tomasz M.; Lowe, Martin (2016-01-11). "The Golgin Family of Coiled-Coil Tethering Proteins". Frontiers in Cell and Developmental Biology. 3. doi:10.3389/fcell.2015.00086. ISSN 2296-634X.{{cite journal}}: CS1 maint: unflagged free DOI (link)
^ Jeyaprakash, A. Arockia; Santamaria, Anna; Jayachandran, Uma; Chan, Ying Wai; Benda, Christian; Nigg, Erich A.; Conti, Elena (2012-05). "Structural and Functional Organization of the Ska Complex, a Key Component of the Kinetochore-Microtubule Interface". Molecular Cell. 46 (3): 274–286. doi:10.1016/j.molcel.2012.03.005. {{cite journal}}: Check date values in: |date= (help); no-break space character in |first4= at position 5 (help); no-break space character in |first6= at position 6 (help); no-break space character in |first= at position 3 (help)
^ Cabezon, Elena; Butler, P. Jonathan G.; Runswick, Michael J.; Walker, John E. (2000-08). "Modulation of the Oligomerization State of the Bovine F1-ATPase Inhibitor Protein, IF1, by pH". Journal of Biological Chemistry. 275 (33): 25460–25464. doi:10.1074/jbc.M003859200. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)
^ Park, Won Min (2020-05-19). "Coiled-Coils: The Molecular Zippers that Self-Assemble Protein Nanostructures". International Journal of Molecular Sciences. 21 (10): 3584. doi:10.3390/ijms21103584. ISSN 1422-0067.{{cite journal}}: CS1 maint: unflagged free DOI (link)
^ Lapenta, Fabio; Aupič, Jana; Strmšek, Žiga; Jerala, Roman (2018). "Coiled coil protein origami: from modular design principles towards biotechnological applications". Chemical Society Reviews. 47 (10): 3530–3542. doi:10.1039/C7CS00822H. ISSN 0306-0012.
^ Bromley, Elizabeth H. C.; Channon, Kevin; Moutevelis, Efrosini; Woolfson, Derek N. (2008-01-01). "Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems". ACS Chemical Biology. 3 (1): 38–50. doi:10.1021/cb700249v. ISSN 1554-8929.
^ Harbury, Pehr B.; Zhang, Tao; Kim, Peter S.; Alber, Tom (1993-11-26). "A Switch Between Two-, Three-, and Four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants". Science. 262 (5138): 1401–1407. doi:10.1126/science.8248779. ISSN 0036-8075.
^ Harbury, Pehr B.; Kim, Peter S.; Alber, Tom (1994-09). "Crystal structure of an isoleucine-zipper trimer". Nature. 371 (6492): 80–83. doi:10.1038/371080a0. ISSN 0028-0836. {{cite journal}}: Check date values in: |date= (help)
^ Woolfson, Derek N. (2005), "The Design of Coiled-Coil Structures and Assemblies", Advances in Protein Chemistry, vol. 70, Elsevier, pp. 79–112, doi:10.1016/s0065-3233(05)70004-8. isbn 9780120342709. pmid 15837514., ISBN 978-0-12-034270-9, retrieved 2023-12-09 {{citation}}: Check |doi= value (help)
^ Berwick, Matthew R.; Lewis, David J.; Jones, Andrew W.; Parslow, Rosemary A.; Dafforn, Timothy R.; Cooper, Helen J.; Wilkie, John; Pikramenou, Zoe; Britton, Melanie M.; Peacock, Anna F. A. (2014-01-29). "De Novo Design of Ln(III) Coiled Coils for Imaging Applications". Journal of the American Chemical Society. 136 (4): 1166–1169. doi:10.1021/ja408741h. ISSN 0002-7863.
^ Jorgensen, Michael D.; Chmielewski, Jean (2022). "Recent advances in coiled-coil peptide materials and their biomedical applications". Chemical Communications. 58 (83): 11625–11636. doi:10.1039/D2CC04434J. ISSN 1359-7345.
^ McFarlane, Ainsley A.; Orriss, George L.; Stetefeld, Jörg (2009-12). "The use of coiled-coil proteins in drug delivery systems". European Journal of Pharmacology. 625 (1–3): 101–107. doi:10.1016/j.ejphar.2009.05.034. {{cite journal}}: Check date values in: |date= (help)
^ Schroeder, Ulrich; Graff, Alexandra; Buchmeier, Sabine; Rigler, Per; Silvan, Unai; Tropel, David; Jockusch, Brigitte M.; Aebi, Ueli; Burkhard, Peter; Schoenenberger, Cora-Ann (2009-03). "Peptide Nanoparticles Serve as a Powerful Platform for the Immunogenic Display of Poorly Antigenic Actin Determinants". Journal of Molecular Biology. 386 (5): 1368–1381. doi:10.1016/j.jmb.2008.11.023. {{cite journal}}: Check date values in: |date= (help)
^ Park, Won Min (2020-05-19). "Coiled-Coils: The Molecular Zippers that Self-Assemble Protein Nanostructures". International Journal of Molecular Sciences. 21 (10): 3584. doi:10.3390/ijms21103584. ISSN 1422-0067.{{cite journal}}: CS1 maint: unflagged free DOI (link)
^ Dexter, A. F.; Fletcher, N. L.; Creasey, R. G.; Filardo, F.; Boehm, M. W.; Jack, K. S. (2017). "Fabrication and characterization of hydrogels formed from designer coiled-coil fibril-forming peptides". RSC Advances. 7 (44): 27260–27271. doi:10.1039/C7RA02811C. ISSN 2046-2069. {{cite journal}}: no-break space character in |first2= at position 3 (help)

Outline of proposed changes

Click on the edit button to draft your outline.

Now that you have compiled a bibliography, it's time to plan out how you'll improve your assigned article.

In this section, write up a concise outline of how the sources you've identified will add relevant information to your chosen article. Be sure to discuss what content gap your additions tackle and how these additions will improve the article's quality.

Consider other changes you'll make to the article, including possible deletions of irrelevant, outdated, or incorrect information, restructuring of the article to improve its readability or any other change you plan on making. This is your chance to really think about how your proposed additions will improve your chosen article and to vet your sources even further.

Note: This is not a draft. This is an outline/plan where you can think about how the sources you've identified will fill in a content gap.

Get Help

[1] Szczepaniak, Krzysztof; Bukala, Adriana; da Silva Neto, Antonio Marinho; Ludwiczak, Jan; Dunin-Horkawicz, Stanislaw (2021-04-01). Elofsson, Arne (ed.). "A library of coiled-coil domains: from regular bundles to peculiar twists". Bioinformatics. 36 (22–23): 5368–5376. doi:10.1093/bioinformatics/btaa1041. ISSN 1367-4803.

[2] Walshaw, John; Woolfson, Derek N (2001-04). "SOCKET: a program for identifying and analysing coiled-coil motifs within protein structures11Edited by J. Thornton". Journal of Molecular Biology. 307 (5): 1427–1450. doi:10.1006/jmbi.2001.4545. {{cite journal}}: Check date values in: |date= (help)

[3] Rose, Annkatrin; Schraegle, Shannon J; Stahlberg, Eric A; Meier, Iris (2005-12). "Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control". BMC Evolutionary Biology. 5 (1). doi:10.1186/1471-2148-5-66. ISSN 1471-2148. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)

[4] Eckert, Debra M.; Kim, Peter S. (2001-09-25). "Design of potent inhibitors of HIV-1 entry from the gp41 N-peptide region". Proceedings of the National Academy of Sciences. 98 (20): 11187–11192. doi:10.1073/pnas.201392898. ISSN 0027-8424.

[5] Chen, Yu A.; Scheller, Richard H. (2001-02). "SNARE-mediated membrane fusion". Nature Reviews Molecular Cell Biology. 2 (2): 98–106. doi:10.1038/35052017. ISSN 1471-0072. {{cite journal}}: Check date values in: |date= (help)

[6] Truebestein, Linda; Leonard, Thomas A. (2016-09). "Coiled‐coils: The long and short of it". BioEssays. 38 (9): 903–916. doi:10.1002/bies.201600062. ISSN 0265-9247. {{cite journal}}: Check date values in: |date= (help)

[7] Linstedt, Adam D.; Jesch, Stephen A.; Mehta, Amy; Lee, Tina H.; Garcia-Mata, Rafael; Nelson, David S.; Sztul, Elizabeth (2000-04). "Binding Relationships of Membrane Tethering Components". Journal of Biological Chemistry. 275 (14): 10196–10201. doi:10.1074/jbc.275.14.10196. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)

[8] Witkos, Tomasz M.; Lowe, Martin (2016-01-11). "The Golgin Family of Coiled-Coil Tethering Proteins". Frontiers in Cell and Developmental Biology. 3. doi:10.3389/fcell.2015.00086. ISSN 2296-634X.{{cite journal}}: CS1 maint: unflagged free DOI (link)

[9] Jeyaprakash, A. Arockia; Santamaria, Anna; Jayachandran, Uma; Chan, Ying Wai; Benda, Christian; Nigg, Erich A.; Conti, Elena (2012-05). "Structural and Functional Organization of the Ska Complex, a Key Component of the Kinetochore-Microtubule Interface". Molecular Cell. 46 (3): 274–286. doi:10.1016/j.molcel.2012.03.005. {{cite journal}}: Check date values in: |date= (help); no-break space character in |first4= at position 5 (help); no-break space character in |first6= at position 6 (help); no-break space character in |first= at position 3 (help)

[10] Cabezon, Elena; Butler, P. Jonathan G.; Runswick, Michael J.; Walker, John E. (2000-08). "Modulation of the Oligomerization State of the Bovine F1-ATPase Inhibitor Protein, IF1, by pH". Journal of Biological Chemistry. 275 (33): 25460–25464. doi:10.1074/jbc.M003859200. {{cite journal}}: Check date values in: |date= (help)CS1 maint: unflagged free DOI (link)

[11] Park, Won Min (2020-05-19). "Coiled-Coils: The Molecular Zippers that Self-Assemble Protein Nanostructures". International Journal of Molecular Sciences. 21 (10): 3584. doi:10.3390/ijms21103584. ISSN 1422-0067.{{cite journal}}: CS1 maint: unflagged free DOI (link)

[12] Lapenta, Fabio; Aupič, Jana; Strmšek, Žiga; Jerala, Roman (2018). "Coiled coil protein origami: from modular design principles towards biotechnological applications". Chemical Society Reviews. 47 (10): 3530–3542. doi:10.1039/C7CS00822H. ISSN 0306-0012.

[13] Bromley, Elizabeth H. C.; Channon, Kevin; Moutevelis, Efrosini; Woolfson, Derek N. (2008-01-01). "Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems". ACS Chemical Biology. 3 (1): 38–50. doi:10.1021/cb700249v. ISSN 1554-8929.

[14] Harbury, Pehr B.; Zhang, Tao; Kim, Peter S.; Alber, Tom (1993-11-26). "A Switch Between Two-, Three-, and Four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants". Science. 262 (5138): 1401–1407. doi:10.1126/science.8248779. ISSN 0036-8075.

[15] Harbury, Pehr B.; Kim, Peter S.; Alber, Tom (1994-09). "Crystal structure of an isoleucine-zipper trimer". Nature. 371 (6492): 80–83. doi:10.1038/371080a0. ISSN 0028-0836. {{cite journal}}: Check date values in: |date= (help)

[16] Woolfson, Derek N. (2005), "The Design of Coiled-Coil Structures and Assemblies", Advances in Protein Chemistry, vol. 70, Elsevier, pp. 79–112, doi:10.1016/s0065-3233(05)70004-8. isbn 9780120342709. pmid 15837514., ISBN 978-0-12-034270-9, retrieved 2023-12-09 {{citation}}: Check |doi= value (help)

[17] Berwick, Matthew R.; Lewis, David J.; Jones, Andrew W.; Parslow, Rosemary A.; Dafforn, Timothy R.; Cooper, Helen J.; Wilkie, John; Pikramenou, Zoe; Britton, Melanie M.; Peacock, Anna F. A. (2014-01-29). "De Novo Design of Ln(III) Coiled Coils for Imaging Applications". Journal of the American Chemical Society. 136 (4): 1166–1169. doi:10.1021/ja408741h. ISSN 0002-7863.

[18] Jorgensen, Michael D.; Chmielewski, Jean (2022). "Recent advances in coiled-coil peptide materials and their biomedical applications". Chemical Communications. 58 (83): 11625–11636. doi:10.1039/D2CC04434J. ISSN 1359-7345.

[19] McFarlane, Ainsley A.; Orriss, George L.; Stetefeld, Jörg (2009-12). "The use of coiled-coil proteins in drug delivery systems". European Journal of Pharmacology. 625 (1–3): 101–107. doi:10.1016/j.ejphar.2009.05.034. {{cite journal}}: Check date values in: |date= (help)

[20] Schroeder, Ulrich; Graff, Alexandra; Buchmeier, Sabine; Rigler, Per; Silvan, Unai; Tropel, David; Jockusch, Brigitte M.; Aebi, Ueli; Burkhard, Peter; Schoenenberger, Cora-Ann (2009-03). "Peptide Nanoparticles Serve as a Powerful Platform for the Immunogenic Display of Poorly Antigenic Actin Determinants". Journal of Molecular Biology. 386 (5): 1368–1381. doi:10.1016/j.jmb.2008.11.023. {{cite journal}}: Check date values in: |date= (help)

[21] Park, Won Min (2020-05-19). "Coiled-Coils: The Molecular Zippers that Self-Assemble Protein Nanostructures". International Journal of Molecular Sciences. 21 (10): 3584. doi:10.3390/ijms21103584. ISSN 1422-0067.{{cite journal}}: CS1 maint: unflagged free DOI (link)

[22] Dexter, A. F.; Fletcher, N. L.; Creasey, R. G.; Filardo, F.; Boehm, M. W.; Jack, K. S. (2017). "Fabrication and characterization of hydrogels formed from designer coiled-coil fibril-forming peptides". RSC Advances. 7 (44): 27260–27271. doi:10.1039/C7RA02811C. ISSN 2046-2069. {{cite journal}}: no-break space character in |first2= at position 3 (help)

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