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StarBase (biological database)

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This article is about the biological database. For the office database software, see StarOffice.
StarBase
Content
DescriptionmicroRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Contact
Research centerSun Yat-sen University
LaboratoryKey Laboratory of Gene Engineering of the Ministry of Education
AuthorsJian-Hua Yang
Primary citationYang & al. (2011)[1]
Release date2010
Access
Websitehttp://starbase.sysu.edu.cn/

StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.

See also

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References

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  1. ^ a b Yang, Jian-Hua; Li Jun-Hao; Shao Peng; Zhou Hui; Chen Yue-Qin; Qu Liang-Hu (Jan 2011). "starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data". Nucleic Acids Res. 39 (Database issue). England: D202-9. doi:10.1093/nar/gkq1056. PMC 3013664. PMID 21037263.
  2. ^ "starBase or ENCORI: Decoding the Encyclopedia of RNA Interactomes". rnasysu.com.
  3. ^ a b "LncRNABase miRNA-lncRNA interactions: decoding miRNA-lncRNA interaction maps". starbase.sysu.edu.cn. Archived from the original on 2013-09-22.
  4. ^ "RBP-LncRNA interactions, starBase: decoding RNA-LncRNA interaction maps". starbase.sysu.edu.cn. Archived from the original on 2013-09-22.
  5. ^ "CeRNABase starBase: Decoding ceRNA regulatory networks from CLIP-Seq (PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data. Competing endogenous RNAs (CeRNAs)". Archived from the original on 2013-09-22. Retrieved 2013-12-08.
  6. ^ Li, JH; Liu, S; Zhou, H; Qu, LH; Yang, JH (Dec 1, 2013). "starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data". Nucleic Acids Research. 42 (1): D92-7. doi:10.1093/nar/gkt1248. PMC 3964941. PMID 24297251.
  7. ^ "Pan-Cancer ceRNA Regulatory Network. StarBase: Decoding miRNA-target, miRNA-ceRNA and protein-RNA interaction maps from CLIP-Seq(PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data". starbase.sysu.edu.cn. Archived from the original on 15 March 2014. Retrieved 13 January 2022.
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