Rhodo-rpoB RNA motif

Rhodo-rpoB
Rhodo-rpoB
	Consensus secondary structure and sequence conservation of Rhodo-rpoB RNA
Identifiers
Symbol	Rhodo-rpoB
Rfam	RF03074
Other data
RNA type	Cis-reg
SO	SO:0005836
PDB structures	PDBe

The Rhodo-rpoB RNA motif is a conserved RNA structure that was discovered by bioinformatics.^[1] Rhodo-rpoB motifs are found in Rhodobacterales.

Rhodo-rpoB motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes. The apparently regulated genes encode subunits of RNA polymerase.

References

^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.

[Weinberg2017b-1] Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.

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