Parabacteroides-1 RNA motif
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| Parabacteroides-1 | |
|---|---|
 Consensus secondary structure and sequence conservation of Parabacteroides-1 RNA | |
| Identifiers | |
| Symbol | Parabacteroides-1 |
| Rfam | RF03088 |
| Other data | |
| RNA type | Gene; sRNA |
| SO | SO:0001263 |
| PDB structures | PDBe |
The Parabacteroides-1 RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] Energetically stable tetraloops often occur in this motif. Parabacteroides-1 motif RNAs are found in Parabacteroides.
Parabacteroides-1 RNAs likely function in trans as small RNAs, and are immediately followed by a predicted Rho-independent transcription terminator hairpin. Based on the protein-coding genes that are nearby to Parabacteroides-1 RNAs, it is likely that at least some of these RNAs are located in prophage region.
References
[edit]- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Research. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.