Natrinema
| Natrinema | |
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| Genus: | Natrinema McGenity et al. 1998[1]
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| Type species | |
| Natrinema pellirubrum McGenity et al. 1998
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Natrinema (common abbreviation Nnm.) is a genus of the Natrialbaceae.[2]
Taxonomy
[edit]As of 2022, there are 18 species validly published in the genus Natrinema.[1]
Natrinema is related to the genus Haloterrigena, established in 1999, resulting in confusion about taxon limits and several species apparently being assigned to the wrong genus.[3] Based on phylogenomic analysis, eight species from Haloterrigena as well as Halopiger salifodinae were transferred to Natrinema in 2022.[4]
Phylogeny
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[2]
| 16S rRNA based LTP_08_2023[5][6][7] | 53 marker proteins based GTDB 08-RS214[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Note: Unassigned Natrinema
- "N. aidingensis" Liu et al. 2003a
- "N. ajinwuensis" Mahansaria et al. 2018
- "N. xinjiang" Habdin & Tohty 2005
- "N. zhouii" Hu et al. 2023
See also
[edit]References
[edit]- ^ a b c J.P. Euzéby. "Natrinema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-10-10.
- ^ a b Sayers; et al. "Natrinema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-10-10.
- ^ Tindall, B. J. (2003). "Taxonomic problems arising in the genera Haloterrigena and Natrinema". Int. J. Syst. Evol. Microbiol. 53 (Pt 5): 1697–1698. Published online 28 February 2003. doi:10.1099/ijs.0.02529-0. PMID 13130070.
- ^ de la Haba, Rafael; Minegishi, Hiroaki; Kamekura, Masahiro; Shimane, Yasuhiro; Ventosa, Antonio (2021). "Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena". Frontiers in Microbiology. 12: 740909. doi:10.3389/fmicb.2021.740909. PMC 8530250. PMID 34690986.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
Further reading
[edit]Scientific journals
[edit]- Xin H; Itoh T; Zhou P; Suzuki K; et al. (2000). "Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China". Int. J. Syst. Evol. Microbiol. 50 (3): 1297–1303. doi:10.1099/00207713-50-3-1297. PMID 10843075.
- Oren A; Ventosa A (2000). "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia". Int. J. Syst. Evol. Microbiol. 50 (3): 1405–1407. doi:10.1099/00207713-50-3-1405. PMID 10843089.
- McGenity TJ; Gemmell RT; Grant WD (1998). "Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov". Int. J. Syst. Bacteriol. 48 (4): 1187–1196. doi:10.1099/00207713-48-4-1187. PMID 9828420.
- Feng, Jie; Wang, Jian; Du, Xin; Tang, Wei; et al. (Mar 2014). "Proteomic Analysis of the Secretome of Haloarchaeon Natrinema sp. J7−2". Journal of Proteome Research. 13 (3): 1248–1258. doi:10.1021/pr400728x. PMID 24512091.[permanent dead link]
Scientific books
[edit]- Gibbons, NE (1974). "Family V. Halobacteriaceae fam. nov.". In RE Buchanan; NE Gibbons (eds.). Bergey's Manual of Determinative Bacteriology (8th ed.). Baltimore: The Williams & Wilkins Co.
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