KDPG-aldolase RNA motif
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| KDPG-aldolase | |
|---|---|
 Consensus secondary structure and sequence conservation of KDPG-aldolase RNA | |
| Identifiers | |
| Symbol | KDPG-aldolase |
| Rfam | RF03115 |
| Other data | |
| RNA type | Gene; sRNA |
| SO | SO:0001263 |
| PDB structures | PDBe |
The KDPG-aldolase RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] KDPG-aldolase motifs are found in Enterobacteriaceae, but is not known to be bpresent in Escherichia coli.
It is ambiguous whether KDPG-aldolase RNAs function as cis-regulatory elements or whether they operate in trans. KDPG-aldolase RNAs appear to be in the 5′ untranslated regions of enterobacterial genes that are annotated as encoding aldolases of 2-keto-3-deoxy-6-phosphogluconate or 2-keto-4-hydroxyglutarate.
References
[edit]- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.