Jump to content

ftsZ-DE RNA motif

From Wikipedia, the free encyclopedia


ftsZ-DE
Consensus secondary structure and sequence conservation of ftsZ-DE RNA
Identifiers
SymbolftsZ-DE
RfamRF02985
Other data
RNA typeGene; sRNA
SOSO:0001263
PDB structuresPDBe

The ftsZ-DE RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] ftsZ-DE motifs are found in bacteria belonging to the genus Fibrobacter.

It is ambiguous whether ftsZ-DE RNAs function as cis-regulatory elements or whether they operate in trans as small RNAs. ftsZ-DE RNAs are consistently located immediately downstream of predicted operons, one of whose genes is predicted as ftsZ. ftsZ genes encode a GTPase that is involved in cell division. This genomic arrangement could suggest that ftsZ-DE RNAs function as cis-regulatory elements as part of the 3' untranslated regions of these operons. However, these locations rarely contain cis-regulatory RNAs in bacteria. Another possibility that was proposed[1] is that ftsZ-DE RNAs represent an unusual form of Rho-independent transcription terminators that are specific to the under-studied phylum Fibrobacterota, to which Fibrobacter belongs. However, the ftsZ-DE motif exhibits some features that are not found in many Rho-independent terminators, especially that it consists of two hairpins. The function of ftsZ-DE RNAs has not, as of 2018, been established.

References

[edit]
  1. ^ a b Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.