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File:Elliptical Genetic Code.JPG

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Summary

Description

Simplified diagram showing codon bias in hydropathy - molar volume space.

This diagram image could be re-created using vector graphics as an SVG file. This has several advantages; see Commons:Media for cleanup for more information. If an SVG form of this image is available, please upload it and afterwards replace this template with {{vector version available|new image name}}.


It is recommended to name the SVG file “Elliptical Genetic Code.svg”—then the template Vector version available (or Vva) does not need the new image name parameter.

The strongest components (bias) for the encoding of anino acid residues are, in order:

C in 2nd position = small size, medium hydropathy

U in 2nd position = average size, hydrophobic

A in 2nd position = average size, hydrophilic

G in 2nd position = outlier Frank Layden (talk) 17:11, 16 October 2013 (UTC)

The y-axis is accurate (cubic Angstroms), but the x-axis could have some error from estimates of hydropathy.

More drawings and raw data at http://www.intde.org

Redrawn from Figure 4 in http://www.complexity.org.au/ci/vol01/fullen01/html/

which attributes the graph to Yang, M. M., W. J. Coleman and D. C. Youvan. 1990. In Reaction Centers of Photosynthetic Bacteria. M.-E. Michel-Beyerle. (Ed.) (Springer-Verlag, Germany) p209-218; listed by Google at [1]
Date
Source Own work
Author Doug youvan

Licensing

Public domain I, the copyright holder of this work, release this work into the public domain. This applies worldwide.
In some countries this may not be legally possible; if so:
I grant anyone the right to use this work for any purpose, without any conditions, unless such conditions are required by law.

Error in the Description

I believe this is in error: "U in 1st position = not hydrophilic". That yellow ellipse should be NGN. Please have a look and confirm. I am having this figure redrawn in vector. If you come across this edit, please tell me what to select as a license. This is my first edit on Commons and I need help. Frank Layden (talk) 17:03, 16 October 2013 (UTC)

The Serine codons with G in the 2nd position are properly included if the yellow ellipse is within NGN, which confirms the description is wrong. I am changing it now. Frank Layden (talk) 17:08, 16 October 2013 (UTC)

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29 May 2008

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Date/TimeThumbnailDimensionsUserComment
current16:36, 30 May 2008Thumbnail for version as of 16:36, 30 May 2008795 × 647 (42 KB)Doug youvanreplace image in error
01:18, 30 May 2008Thumbnail for version as of 01:18, 30 May 2008782 × 650 (44 KB)Doug youvan{{Information |Description={{en|1=All-elliptical tracing of the genetic code in hydropathy - molar volume space.}} |Source=Own work by uploader |Author=Doug youvan |Date=5/29/2008 |Permission= |other_versions= }} {{ImageUpload|full}}

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