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Fabio Rinaldi

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Dr. Fabio Rinaldi is head of NLP research at IDSIA, Switzerland. He earned his PhD in Computational Linguistics from the University of Zurich, Switzerland in 2008. He continued to work at the University of Zurich as a lecturer, senior researcher and group leader until 2020.

Currently, Rinaldi is a group leader at the Swiss Institute of Bioinformatics (SIB),[1] and a visiting scientist at the Center for Genomic Sciences [2] (UNAM, Mexico), where he collaborates with the RegulonDB group.

He is the initiator and team leader of the OntoGene research group,[3] which focuses on Text Mining for biomedical applications.

Rinaldi is a very active contributor to the field of biomedical text mining.[4][5] He is one of the co-organizers of the well-known BioCreAtIvE[6] challenges on evaluation of biomedical text mining technologies.

Selected publications

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  1. Rinaldi, F. (2008). "Laser: A review". Clinics in Dermatology. 26 (6): 590–601. doi:10.1016/j.clindermatol.2007.09.014. PMID 18940539. S2CID 19718531.
  2. Rinaldi, F.; Clematide, S.; Garten, Y.; Whirl-Carrillo, M.; Gong, L.; Hebert, J. M.; Sangkuhl, K.; Thorn, C. F.; Klein, T. E.; Altman, R. B. (2012). "Using ODIN for a PharmGKB revalidation experiment". Database. 2012: bas021. doi:10.1093/database/bas021. PMC 3332569. PMID 22529178.
  3. Rinaldi, F.; Schneider, G.; Clematide, S. (2012). "Relation mining experiments in the pharmacogenomics domain". Journal of Biomedical Informatics. 45 (5): 851–861. doi:10.1016/j.jbi.2012.04.014. PMID 22580177.
  4. Rinaldi, F.; Clematide, S.; Hafner, S.; Schneider, G.; Grigonyte, G.; Romacker, M.; Vachon, T. (2013). "Using the OntoGene pipeline for the triage task of BioCreative 2012". Database. 2013: bas053. doi:10.1093/database/bas053. PMC 3568389. PMID 23396322.
  5. Rinaldi, F.; Najafi, B. (2013). "Temperature measurement in WTE boilers using suction pyrometers". Sensors. 13 (11): 15633–15655. Bibcode:2013Senso..1315633R. doi:10.3390/s131115633. PMC 3871099. PMID 24248279.
  6. Rinaldi, F.; Ellendorff, T. R.; Madan, S.; Clematide, S.; Van Der Lek, A.; Mevissen, T.; Fluck, J. (2016). "BioCreative V track 4: A shared task for the extraction of causal network information using the Biological Expression Language". Database. 2016: baw067. doi:10.1093/database/baw067. PMC 4940434. PMID 27402677.
  7. Sorbellini, E.; Pinto, D.; Marzani, B.; Rinaldi, F. (2018). "Drug Treatment for Androgenetic Alopecia: First Italian Questionnaire Survey on What Dermatologists Think about Finasteride". Dermatology and Therapy. 8 (2): 259–267. doi:10.1007/s13555-018-0233-6. PMC 6002321. PMID 29574572.
  8. Marzani, B.; Pinto, D.; Sorbellini, E.; Rinaldi, F. (2018). "New multi-targeting strategy in hair growth promotion: In vitro and in vivo studies". Giornale Italiano di Dermatologia e Venereologia. 153 (3): 338–343. PMID 29766701.
  9. De Padova, M. P.; Marzani, B.; Pinto, D.; Rinaldi, F. (2018). "A Single-Arm, Open-Label, Phase IV Study to Evaluate the Efficacy of a Topical Formulation for Hyperkeratotic Actinic Keratosis Lesions". Dermatology and Therapy. 8 (3): 455–462. doi:10.1007/s13555-018-0252-3. PMC 6109024. PMID 30054800.
  10. Furrer, L.; Jancso, A.; Colic, N.; Rinaldi, F. (2019). "OGER++: Hybrid multi-type entity recognition". Journal of Cheminformatics. 11 (1): 7. doi:10.1186/s13321-018-0326-3. PMC 6689863. PMID 30666476.
  11. Rinaldi, F.; Trink, A.; Pinto, D. (2020). "Efficacy of Postbiotics in a PRP-Like Cosmetic Product for the Treatment of Alopecia Area Celsi: A Randomized Double-Blinded Parallel-Group Study". Dermatology and Therapy. 10 (3): 483–493. doi:10.1007/s13555-020-00369-9. PMC 7211773. PMID 32279227.
  12. Rinaldi, F.; Trink, A.; Giuliani, G.; Pinto, D. (2021). "Italian Survey for the Evaluation of the Effects of Coronavirus Disease 2019 (COVID-19) Pandemic on Alopecia Areata Recurrence". Dermatology and Therapy. 11 (2): 339–345. doi:10.1007/s13555-021-00498-9. PMC 7880634. PMID 33580408.
  13. Davoodijam, E.; Ghadiri, N.; Lotfi Shahreza, M.; Rinaldi, F. (2021). "MultiGBS: A multi-layer graph approach to biomedical summarization". Journal of Biomedical Informatics. 116. arXiv:2008.11908. doi:10.1016/j.jbi.2021.103706. PMID 33610879. S2CID 221340611.
  14. Babino, G.; Caccavale, S.; Pinto, D.; Trink, A.; Giuliani, G.; Rinaldi, F.; Argenziano, G. (2021). "A Randomized Double-Blind Parallel-Group Study to Evaluate the Long-Term Effects of a Medical Device Containing 0.3% Octatrienoic Acid in the Treatment of Grade III Actinic Keratosis". Dermatology and Therapy. 11 (5): 1751–1762. doi:10.1007/s13555-021-00594-w. PMC 8484398. PMID 34476756.
  15. Kanjirangat, V.; Rinaldi, F. (2021). "Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information". Journal of Biomedical Informatics. 122. doi:10.1016/j.jbi.2021.103893. PMID 34481058. S2CID 237417517.
  16. Zanoli, R.; Lavelli, A.; Löffler, T.; Perez Gonzalez, N. A.; Rinaldi, F. (2022). "An annotated dataset for extracting gene-melanoma relations from scientific literature". Journal of Biomedical Semantics. 13 (1): 2. doi:10.1186/s13326-021-00251-3. PMC 8772125. PMID 35045882.
  17. Rinaldi, F.; Marotta, L.; Mascolo, A.; Amoruso, A.; Pane, M.; Giuliani, G.; Pinto, D. (2022). "Facial Acne: A Randomized, Double-Blind, Placebo-Controlled Study on the Clinical Efficacy of a Symbiotic Dietary Supplement". Dermatology and Therapy. 12 (2): 577–589. doi:10.1007/s13555-021-00664-z. PMC 8850513. PMID 35061237.
  18. Furrer, L.; Cornelius, J.; Rinaldi, F. (2022). "Parallel sequence tagging for concept recognition". BMC Bioinformatics. 22 (Suppl 1): 623. doi:10.1186/s12859-021-04511-y. PMC 8943923. PMID 35331131.
  19. Shaitarova, A.; Zaghir, J.; Lavelli, A.; Krauthammer, M.; Rinaldi, F. (2023). "Exploring the Latest Highlights in Medical Natural Language Processing across Multiple Languages: A Survey". Yearbook of Medical Informatics. 32 (1): 230-243. doi:10.1055/s-0043-1768726. PMC 10751112. PMID 38147865.

Notes

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  1. ^ "Group Page at the SIB".
  2. ^ "Center for Genomic Sciences, UNAM, Mexico".
  3. ^ "OntoGene GitHub page".
  4. ^ Fabio Rinaldi publications indexed by Google Scholar
  5. ^ Fabio Rinaldi at DBLP Bibliography Server Edit this at Wikidata
  6. ^ "BioCreative web site".
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