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Epi Info

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Epi Info
Developer(s)Centers for Disease Control and Prevention
Stable release
7.2.5 / November 23, 2021; 2 years ago (2021-11-23)
Repository
Written inMicrosoft Visual C# 4.0
Operating systemWindows
Android
iOS
TypeStatistical software, epidemiology
LicenseApache License 2.0[1]
Websitewww.cdc.gov/epiinfo/

Epi Info is statistical software for epidemiology developed by Centers for Disease Control and Prevention (CDC) in Atlanta, Georgia (US).

Epi Info has been in existence for over 20 years and is currently available for Microsoft Windows, Android and iOS, along with a web and cloud version. The program allows for electronic survey creation, data entry, and analysis. Within the analysis module, analytic routines include t-tests, ANOVA, nonparametric statistics, cross tabulations and stratification with estimates of odds ratios, risk ratios, and risk differences, logistic regression (conditional and unconditional), survival analysis (Kaplan Meier and Cox proportional hazard), and analysis of complex survey data. The software is an open-source project with limited support.

An analysis conducted in 2003 documented over 1,000,000 downloads of Epi Info from 180 countries.[2]

History

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Epi Info has been in development for over 20 years. The first version, Epi Info 1, was originally developed by Jeff Dean while he was in high school.[3][4] It was an MS-DOS batch file on 5.25" floppy disks and released in 1985.[5] MS-DOS continued to be the only supported operating system until the release of Epi Info 2000, which was written in Microsoft's Visual Basic and became the first Windows-compatible version. The last MS-DOS version was Epi Info 6.04d released in January 2001.

Epi Info 2000 changed the way data was stored by adopting the Microsoft Access database format, rather than continuing to use the plain-text file format from the MS-DOS versions. Following the release of Epi Info 2000 was Epi Info 2002, then Epi Info version 3.0, and finally the open-source Epi Info 7. Epi Info 7 was made open source on November 13, 2008, when its source code was uploaded to Codeplex for the first time. The 7 series is the presently maintained Epi Info product line. Note that Epi Info 3 for Windows is different from Epi Info 3 for MS-DOS even though they share the same version number.

After Microsoft shut down Codeplex in December 2017, the repository of Epi Info migrated to GitHub.

Features

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From a user's perspective, the most important functions of Epi Info are the ability to rapidly develop a questionnaire, customize the data entry process, quickly enter data into that questionnaire, and then analyze the data. For epidemiological uses, such as outbreak investigations, being able to rapidly create an electronic data entry screen and then do immediate analysis on the collected data can save considerable amounts of time versus using paper surveys.

Epi Info uses three distinct modules to accomplish these tasks: Form Designer, Enter, and Analysis. Other modules include the Dashboard module, a mapping module, and various utilities such as StatCalc.

Electronic questionnaires can also be created in the Form Designer module. Individual questions can be placed anywhere on a page and each form may contain multiple pages. The user is given a high degree of control over the form's appearance and function. The user defines both the question's prompt and the format of the data that is to be collected. Data types include numbers, text strings, dates, times, and Boolean. Users can also create drop-down lists, code tables, and comment legal fields. One of the more powerful features of Form Designer is the ability to program intelligence into a form through a feature called "check code". Check code allows for certain events to occur depending on what action a data entry person has taken. For example, if the data entry person types "Male" into a question on gender, any questions relating to pregnancy might then be hidden or disabled. Skip patterns, message boxes, and math operations are also available. Relational database modeling is supported, as users may link their form to any number of other forms in their database.

The "Classic Analysis" module is where users analyze their data. Import and export functions exist that allow for data to be converted between plain-text, CSV, Microsoft Excel, Microsoft Access, MySQL, Microsoft SQL Server, and other formats. Many advanced statistical routines are provided, such as t-tests, ANOVA, nonparametric statistics, cross tabulations and stratification with estimates of odds ratios, risk ratios, and risk differences, logistic regression (conditional and unconditional), survival analysis (Kaplan Meier and Cox proportional hazard), and analysis of complex survey data.

The "Visual Dashboard" module is a lighter-weight Analysis component that is designed to be easy to use, but does not contain the full set of data management features that the "Classic Analysis" module does.

Using the Map module, data can be displayed either by geographic reference or by GPS coordinates.

Older versions of Epi Info contained a Report module and a Menu module. The Report module allowed the user to edit and format the raw output from other Epi Info modules into presentable documents. The menu module allowed for the editing and re-arranging of the basic Epi Info menu structure. This module was powerful enough that several applications have been built off of it (in versions of Epi Info prior to version 7), including the National Electronic Telecommunications System for Surveillance (NETSS) for Epi Info 6. Unlike the other modules, the menu module does not have a design-mode user interface, but instead resides in a .mnu file whose scripts must be edited manually. In Epi Info 7, the Visual Dashboard assumes some of the basic functions of the report module.

Epi Info 7 includes a number of nutritional anthropometric functions that can assist in recording and evaluating measurements of length, stature, weight, head circumference, and arm circumference for children and adolescents. They can be used to calculate percentiles and number of standard deviations from the mean (Z-scores) using the CDC/WHO 1978 growth reference, CDC 2000 growth reference, the WHO Child Growth Reference, or the WHO Reference 2007. It replaces the NutStat and EpiNut modules found in prior versions of Epi Info.

Epi Info in research

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Epi Info is used for analysis in medical research, and for data entry. Examples of its use for research include a study of eye conditions,[6] a study of healthcare infections[7] and a study of psychiatric morbidity.[8] Examples of papers that used Epi Info for data entry include a study on nutrition[9] and an epidemiological survey about echinococcosis.[10]

Reviews of Epi Info

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Epi Info is very briefly described in a review of software that might be used for research about cancer trend analysis.[11] Another report indicated that Epi Info was among the most widely used tools during outbreaks.[12] Another study also reported that Epi Info was among the tools used to collect data during pandemics.[13] One study compared the statistical results from various free to use statistical software and found that Epi Info gave the same results as did SAS.[14]

Open Epi

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OPenEpi is an online version of the software and has inbuilt statistical calculators. For more information, see the article OpenEpi.

Future developments

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Version 7 is in continuing development as an open source project. Web-based data entry, web-based analysis, and mobile data collection tools are currently available and will see continued improvement in 2014 and beyond.

Release history

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Series Version Operating System Support Support status Release date Significant changes
Epi Info for DOS 1 MS-DOS Red XN 1 Sep 1985
2 MS-DOS Red XN 20 Aug 1986
3 MS-DOS Red XN 1988
4.1 MS-DOS Red XN 15 Nov 1988
5.01 MS-DOS Red XN Oct 1990 Allowed European date formats and non-English characters in data fields.[15]
6.0 MS-DOS Red XN 1992 Added programmable menu system
6.02 MS-DOS Red XN Oct 1994
6.04c MS-DOS Red XN 1998 Year 2000 compatibility upgrade
6.04d MS-DOS Green tickY Jan 2001
Epi Info 2000 2000 1.1.2 Windows 9x, NT 4.0, 2000 Red XN 2 Nov 2001 First Windows-compatible version of Epi Info.
2002 R2 Windows 9x, NT 4.0, 2000, XP Red XN 30 Jan 2003
Epi Info 3 3.0 Windows 9x, NT 4.0, 2000, XP Red XN n/a
3.01 Windows 9x, NT 4.0, 2000, XP Red XN 3 Nov 2003
3.2 Windows 9x, NT 4.0, 2000, XP Red XN 4 Feb 2004
3.2.2 Windows 9x, NT 4.0, 2000, XP Red XN 14 Apr 2004
3.3 Windows 98, NT 4.0, 2000, XP Red XN 5 Oct 2004 Windows 95 no longer supported, case-based mapping functionality added to the Analysis MAP command.[16]
3.3.2 Windows 98, NT 4.0, 2000, XP Red XN 9 Feb 2005
3.4 Windows 98, NT 4.0, 2000, XP Red XN 30 Apr 2007 Ability to use standard ISO date formats, disallowed multiple instances of the Analysis module, added ability to run reports from Analysis, and CDC flags added to the Nutrition module.[16]
3.4.1 Windows 98, NT 4.0, 2000, XP Red XN 9 Jul 2007 Added a right-to-left language controller in Analysis[16]
3.4.2 Windows 98, NT 4.0, 2000, XP Red XN 20 Sep 2007
3.4.3 Windows 98, NT 4.0, 2000, XP Red XN 17 Oct 2007
3.5 Windows 98, NT 4.0, 2000, XP SP3 Red XN 9 Jun 2008 Added feature to use standardized vocabularies.[16] First version to require Service Pack 3 if running Epi Info on a computer with Windows XP.[16]
3.5.1 Windows 98, NT 4.0, 2000, XP SP3, Vista Green tickY 13 Aug 2008 First version compatible with Windows Vista. This version also fixed compatibility for languages that are read right-to-left.[16]
3.5.2 Windows 98, NT 4.0, 2000, XP SP3, Vista, 7 Green tickY 17 Dec 2010 First version compatible with Windows 7. Also included a preview of the new Epi Info 7 MakeView and Enter tools.
3.5.3 Windows 98, NT 4.0, 2000, XP SP3, Vista, 7 Green tickY 26 Jan 2011 Minor update to the Epi Info Enter tool released with 3.5.2.
3.5.4 Windows 98, NT 4.0, 2000, XP SP3, Vista, 7 Green tickY 10 Aug 2012 Modified installation packaging.
Epi Info 7 7.0.5 (Alpha) Windows XP, Vista, 7, Ubuntu Red XN 5 Jan 2009 Programming language changed to Visual C# .NET; MySQL and SQL Server database support added; XML meta-data support added; Linux compatibility added; first Windows version of Epi Info to be open source.
7.0.7.0 Windows XP, Vista, 7 Red XN 27 Sep 2011 Upgraded framework to .NET version 3.5; Added ability to run Epi Info 7 from a flash drive without administrator rights; Added ability for Epi Info 7 forms to work with essentially unlimited number of fields; Mapping module added; Geocoding added; Visual Dashboard module added; plugin-based data driver model added; Linux and MySQL support removed; Growth charting added.
7.0.8.0 Windows XP, Vista, 7 Green tickY 28 Oct 2011 Release build. Added ability to install Epi Info 7 using a traditional setup file; Added new check code commands; Added ability to calculate z-scores for the WHO Child Growth Standards and WHO Reference 2007.
7.1.0.6 Windows XP, Vista, 7 Green tickY 9 Aug 2012 Major updates to Dashboard module; Added web-based data entry capability; Added features to allow compatibility with the Epi Info for Android app.
7.1.4.0 Windows XP, Vista, 7, 8 Green tickY 11 Jul 2014 Increased precision for some statistical results and other improvements to Analysis. Added ability to decrypt and import data collected on iOS devices and other improvements to Import/Export. Included other minor updates to Form Designer, Enter, and Dashboard.
7.1.5.0 Windows XP, Vista, 7, 8 Green tickY 19 Mar 2015 Added SQRT, POISSONLCL, and POISSONUCL functions to Analysis. Fixed regional number formatting issues in Enter. Added small cell size and sparse data warnings to 2x2 and MxN analyses. Included various changes to support the VHF application and to support the Android Companion. Included other minor updates to Form Designer, Enter, Analysis, and Dashboard.
7.2.0.1 Requires Microsoft Windows XP or higher with Microsoft .NET 4.0. 27 Jun 2016
7.2.6.0 Requires Microsoft Windows 7 or higher with Microsoft .NET 4.8 Green tickY 25 Oct 2023
Series Version Operating System Support Support status Release date Significant changes

See also

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References

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  1. ^ "Epi-Info-Community-Edition/license.md". Github. Retrieved 18 January 2019.
  2. ^ "CDC Epi Info - About Epi Info". CDC. Retrieved 2009-02-02.
  3. ^ Somers, James (10 December 2018). "The Friendship That Made Google Huge". The New Yorker. Retrieved 17 June 2022.
  4. ^ Oremus, Will (23 January 2013). "The Optimizer How Google's Jeff Dean became the Chuck Norris of the Internet". Slate. Retrieved 17 June 2022.
  5. ^ "CDC Epi Info - Museam Version 1". CDC. Retrieved 2009-02-02.
  6. ^ Kumar, Javant (2021). "Clinical characteristics of morning glory disc anomaly in South India". Taiwan J Ophthalmol. 11 (1): 57–63. doi:10.4103/tjo.tjo_52_20. PMC 7971437. PMID 33767956.
  7. ^ Johansson, Ida (2020). "Healthcare-associated infections in Stockholm County Council 2008-2018". Läkartidningen. 117. PMID 32293019.
  8. ^ Kuranga, Amudalat (2021). "Psychiatric morbidity amongst adolescents in a Nigerian juvenile correctional facility". S Afr J Psychiatr. 27: 1590. doi:10.4102/sajpsychiatry.v27i0.1590. PMC 8424729. PMID 34522436.
  9. ^ Teferi, Haimanot (2021). "Magnitude and Associated Factors of Undernutrition Among Children Aged 6–59 Months in Ethiopian Orphanage Centres". Pediatric Health Med Ther. 12: 141–150. doi:10.2147/PHMT.S289809. PMC 7989956. PMID 33776509.
  10. ^ Li, Bin (2019). "Epidemiological survey of echinococcosis in Tibet Autonomous Region of China". Infect Dis Poverty. 8 (1): 29. doi:10.1186/s40249-019-0537-5. PMC 6487032. PMID 31030673.
  11. ^ Xu, Jie (2020). "Statistics and pitfalls of trend analysis in cancer research: a review focused on statistical packages". J Cancer. 11 (10): 2957–2961. doi:10.7150/jca.43521. PMC 7086268. PMID 32226510.
  12. ^ Keating, Patrick (2021). "Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey". BMC Public Health. 21 (1): 1741. doi:10.1186/s12889-021-11790-w. PMC 8464108. PMID 34560871.
  13. ^ Silenou, Bernard (2021). "Availability and Suitability of Digital Health Tools in Africa for Pandemic Control: Scoping Review and Cluster Analysis". JMIR Public Health and Surveillance. 7 (12): e30106. doi:10.2196/30106. PMC 8738990. PMID 34941551.
  14. ^ Shackman, Gene (10 May 2022). "Free To Use Statistical Software: Comparing Statistical Analyses". SSRN. SSRN 4105959. Retrieved 17 June 2022.
  15. ^ "CDC Epi Info - Museam Version 5". CDC. Retrieved 2009-02-02.
  16. ^ a b c d e f "EPI INFO VERSION 3.5.1 READ ME FILE". CDC. Archived from the original on 2009-07-04. Retrieved 2009-02-02.
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