Alteribacter
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| Genus: | Alteribacter Gupta et al. 2020
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Information based from LPSN 2021 | |
Alteribacter is a genus of Gram-positive or Gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales.[1][2] The type species for this genus is Alteribacter auranticus.[3]
Alteribacter is composed of species originally belonging to the genus Bacillus, a large genus that displays extensive polyphyly among its members. The polyphyletic nature of this genus has long been recognized by the scientific community,[4][5] and occurred partly due to the vague criteria used to assign species into this genus.[6] For example, many phylogenetically unrelated species possess the ability to form endospores under aerobic conditions, yet this criterion was deemed sufficient for inclusion into the genus Bacillus.[6] In order to clarify the complex taxonomic interrelationships of this genus, multiple studies focused on phylogenetic and comparative genomic analyses have restricted Bacillus to only include species closely related to Bacillus subtilis and Bacillus cereus[7][1] as well as transferred many species into new novel genera such as Virgibacillus, Solibacillus, Brevibacillus and Ectobacillus.[8][9][10][1]
The name Alteribacter is derived from the prefix "alter-" (which comes from the Latin adjective alter, and translates to "another") and the suffix "-bacter" (which comes from the Latin noun bacter, referring to a rod). Put together, the name Alteribacter refers to another rod.[1]
Biochemical characteristics and molecular signatures
[edit]Members of the genus Alteribacter are aerobic, endospore-forming, non-motile cells. The bacterial colonies they form are generally yellowish/goldish-orange in colour and are catalase-positive and oxidase-negative. Species can be found in Hungarian soda lakes and the rhizosphere soil of Populus euphratica tree in the Taklamakan desert. Alteribacter can survive in temperatures ranging from 10°C to 45°C, but optimal growth occurs in the range of 25-28°C.[1]
Analyses of genome sequences from Bacillaceae species have identified five conserved signature indels (CSIs) that are uniquely present in members of the Alteribacter genus in the proteins phosphatidylserine decarboxylase, tRNA pseudouridine (38-40) synthase TruA, competence/damage-inducible protein A, NO-inducible flavohemoprotein and ABC transporter substrate-binding protein.[1] These CSIs provide a method of differentiation in molecular terms to demarcate Alteribacter from other Bacillaceae genera and bacteria.
Taxonomy
[edit]As of May 2021, there are a total of 3 species with validly published names in the genus Alteribacter.[3] From comparative genomic studies, species belonging to Alteribacter were found to exclusively share a number of conserved signature indels (a type of molecular marker) as well as form a monophyletic branch within various phylogenetic trees, indicating their unrelatedness to other Bacillus species.[1] This branching pattern was also reflected in the Genome Taxonomy Database (GTDB).[11] Together, these findings led to the transfer of these species into Alteribacter.
There is one non-validly published species, 'Bacillus lacisalsi", that was also found to branch reliably with other members of the Alteribacter clade as well as share the unique molecular markers.[1] However, transfer was not proposed for this species due to the lack of culture strain information. It is important to continually monitor and update these classifications as new Bacillus species are identified and their genome sequence and culture strain information becomes available.
References
[edit]- ^ a b c d e f g h Gupta, Radhey S.; Patel, Sudip; Saini, Navneet; Chen, Shu (2020-11-01). "Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5753–5798. doi:10.1099/ijsem.0.004475. ISSN 1466-5026. PMID 33112222.
- ^ Brenner, Don J.; Krieg, Noel R.; Staley, James T.; Garrity, George M.; Boone, David R.; De Vos, Paul; Goodfellow, Michael; Rainey, Fred A.; Schleifer, Karl-Heinz, eds. (2005). Bergey's Manual® of Systematic Bacteriology. doi:10.1007/0-387-28022-7. ISBN 978-0-387-24144-9.
- ^ a b "Genus: Alteribacter". lpsn.dsmz.de. Retrieved 2021-05-25.
- ^ Logan, N.A. (2011-12-20). "Bacillus and relatives in foodborne illness". Journal of Applied Microbiology. 112 (3): 417–429. doi:10.1111/j.1365-2672.2011.05204.x. ISSN 1364-5072. PMID 22121830.
- ^ La Duc, Myron T; Satomi, Masataka; Agata, Norio; Venkateswaran, Kasthuri (March 2004). "gyrB as a phylogenetic discriminator for members of the Bacillus anthracis–cereus–thuringiensis group". Journal of Microbiological Methods. 56 (3): 383–394. doi:10.1016/j.mimet.2003.11.004. ISSN 0167-7012. PMID 14967230.
- ^ a b Ash, Carol; Farrow, J.A.E.; Wallbanks, Sally; Collins, M.D. (2008-06-28). "Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences". Letters in Applied Microbiology. 13 (4): 202–206. doi:10.1111/j.1472-765x.1991.tb00608.x. ISSN 0266-8254. S2CID 82988953.
- ^ Patel, Sudip; Gupta, Radhey S. (2020-01-01). "A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov". International Journal of Systematic and Evolutionary Microbiology. 70 (1): 406–438. doi:10.1099/ijsem.0.003775. ISSN 1466-5026. PMID 31617837.
- ^ Heyndrickx, M.; Lebbe, L.; Kersters, K.; Hoste, B.; De Wachter, R.; De Vos, P.; Forsyth, G.; Logan, N. A. (1999-07-01). "Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998". International Journal of Systematic and Evolutionary Microbiology. 49 (3): 1083–1090. doi:10.1099/00207713-49-3-1083. ISSN 1466-5026. PMID 10425765.
- ^ Shida, O.; Takagi, H.; Kadowaki, K.; Komagata, K. (1996-10-01). "Proposal for Two New Genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov". International Journal of Systematic Bacteriology. 46 (4): 939–946. doi:10.1099/00207713-46-4-939. ISSN 0020-7713. PMID 8863420.
- ^ Mual, Poonam; Singh, Nitin Kumar; Verma, Ashish; Schumann, Peter; Krishnamurthi, Srinivasan; Dastager, Syed; Mayilraj, Shanmugam (2016-05-01). "Reclassification of Bacillus isronensis Shivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009". International Journal of Systematic and Evolutionary Microbiology. 66 (5): 2113–2120. doi:10.1099/ijsem.0.000982. ISSN 1466-5026. PMID 26907585.
- ^ "GTDB - Tree". gtdb.ecogenomic.org. Retrieved 2021-05-25.