Hopes were high as the 49er's returned 15 starters heading into the 1985 season. They were once again led by senior quarterback Doug Gaynor who passed for 3563 yards a 71.2% completion percentage and 19 TD's. He returned his entire receiving corps from the previous season including Charles Lockett 69 catches, 949 yards and 10 TD's, Troy Ory (46-554-5), tight end Greg Locy (38-502-0) and running back Mark Templeton (62-500-1). The rushing attack was led by Martin Sartin who ran for 441 yards and scored 13 total TD's. The Niners also received a strong contribution from Sheldon Gaines who gained a combined 514 yards rushing and receiving along with leading the team as a kick-returner. The defense was led by a strong pass rush from ends Tom Hensley and Chuck Meierbachtol. Val James led the secondary with 5 interceptions.
The Niners were a "streaky" team in 1985. They lost their first two games, then reeled off three wins, two losses, three wins and finally two losses. The highlight of the season was a showdown with Fresno St. The 49er's were only one game behind the Bulldogs in the PCAA standings for this late-season matchup. The game was an exciting one, as the 49ers drove down the field in the waning seconds. A 54-yard field goal attempt sailed wide right and Fresno prevailed 33-31, clinching the conference championship.