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Planctomycetaceae

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Planctomycetaceae
Microscopy image of Planctomyces bekefii, showing how its stalk-like structures connect cells into a conglomerate.
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Planctomycetota
Class: Planctomycetia
Order: Planctomycetales
Schlesner and Stackebrandt 1987[1]
Family: Planctomycetaceae
Schlesner and Stackebrandt 1987[1]
Genera[2]

See section "Phylogeny"

Planctomycetaceae is a family of bacteria. It is the only family in the order Planctomycetales.[3] Member species of this family are mostly spherical, inhabiting a vast array of aquatic environments with the majority being in marine ecosystems.[4] Planctomycetaceae species are generally aerobic, but are uniquely classified by fatty acid synthesis and stalk-like formations.[5]

Morphology

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When compared to other species of the order Planctomycetales, species of the Planctomycetaceae family have very few unique characteristics that can taxonomically distinguish them from other related families. Planctomycetaceae species typically form colonies of a pink or white hue.[6] Their cell structure has been recorded to be spherical, but many species are elliptical or pear-shaped; all species range from 0.4 micrometers to 2.5 micrometers in size.[6][7]

When reproducing, cell structures of Planctomycetaceae are usually observed to be in either a rosette or aggregate grouping; the species Thalassoglobus neptunius is the only known example in this family capable of growing in chains.[6] Some members of Planctomycetaceae (including other taxonomic groups of Planctomycetota) develop stalk-like projections.[6][7] The species Planctomyces bekefii is well-known in this family for its stalks, using them to connect newly produced cells.[7]

Physiology

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Families in Planctomycetales that have more research conducted have been noted to undergo anaerobic respiration, with the family Brocadiaceae being well known for its anaerobic ammonium redox (anammox) capabilities.[8] Planctomycetaceae is one of the many families of Planctomycetales that is both aerobic and cannot do anammox reactions.[9]

Similar to other families, members of Planctomycetaceae are capable of motility using flagella with some having cycles of motile and immotile lifestyles.[10] Standing out from other bacteria, this group has been able to utilize its stalk-like structures to aid in biofilm production, providing a second source of adherence than usual extracellular polymeric substances.[9]

Fatty acids and lipids synthesized by Planctomycetaceae are similar in composition to other families of the order Planctomycetales, but are unique enough to be considered taxonomically critical. Phosphocholine, phosphatidylcholine, and phosphatidylglycerol are considered the major lipids of this family, which only some other families are capable of synthesizing.[9] Most notably, fatty acid C18:1-ω9C is synthesized only within this family of Planctomycete bacteria.[9]

Phylogeny

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The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[11] As of 2022, researchers have discovered that there are currently 14 genera and 29 species within Planctomycetaceae.[12]

16S rRNA based LTP_08_2023[13][14][15] 120 marker proteins based GTDB 08-RS214[16][17][18]

Fuerstiella Kohn et al. 2020

Symmachiella Salbreiter et al. 2021

Schlesneria Kulichevskaya et al. 2007

Planctopirus Scheuner et al. 2015

Thalassoroseus Kumar et al. 2023

Polystyrenella Peeters et al. 2021

Gimesia Scheuner et al. 2015

Rubinisphaera Scheuner et al. 2015

Calycomorphotria Schubert et al. 2021

Alienimonas Boersma et al. 2021

Maioricimonas Rivas-Marin et al. 2021

Caulifigura Kallscheuer et al. 2021

Planctomicrobium Kulichevskaya et al. 2015

Thalassoglobus Kohn et al. 2020

Genera incertae sedis:

References

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  1. ^ a b Schlesner H, Stackebrandt E. (1986). "Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov". Syst. Appl. Microbiol. 8 (3): 174–176. doi:10.1016/S0723-2020(86)80072-8.
  2. ^ a b J.P. Euzéby. "Planctomycetaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  3. ^ Euzéby JP, Parte AC. "Planctomycetales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved August 25, 2021.
  4. ^ Wiegand, Sandra; Jogler, Mareike; Boedeker, Christian; Pinto, Daniela; Vollmers, John; Rivas-Marín, Elena; Kohn, Timo; Peeters, Stijn H.; Heuer, Anja; Rast, Patrick; Oberbeckmann, Sonja; Bunk, Boyke; Jeske, Olga; Meyerdierks, Anke; Storesund, Julia E. (January 2020). "Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology". Nature Microbiology. 5 (1): 126–140. doi:10.1038/s41564-019-0588-1. ISSN 2058-5276. PMC 7286433. PMID 31740763.
  5. ^ Vitorino, Inês Rosado; Lage, Olga Maria (2022-02-01). "The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes". Antonie van Leeuwenhoek. 115 (2): 169–201. doi:10.1007/s10482-021-01699-0. ISSN 1572-9699.
  6. ^ a b c d Vitorino, Inês Rosado; Lage, Olga Maria (2022-02-01). "The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes". Antonie van Leeuwenhoek. 115 (2): 169–201. doi:10.1007/s10482-021-01699-0. ISSN 1572-9699.
  7. ^ a b c Wiegand, Sandra; Jogler, Mareike; Jogler, Christian (November 2018). "On the maverick Planctomycetes". academic.oup.com. doi:10.1093/femsre/fuy029. Retrieved 2024-11-11.
  8. ^ Kuypers, Marcel M. M.; Sliekers, A. Olav; Lavik, Gaute; Schmid, Markus; Jørgensen, Bo Barker; Kuenen, J. Gijs; Sinninghe Damsté, Jaap S.; Strous, Marc; Jetten, Mike S. M. (April 2003). "Anaerobic ammonium oxidation by anammox bacteria in the Black Sea". Nature. 422 (6932): 608–611. doi:10.1038/nature01472. ISSN 1476-4687.
  9. ^ a b c d Vitorino, Inês Rosado; Lage, Olga Maria (2022-02-01). "The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes". Antonie van Leeuwenhoek. 115 (2): 169–201. doi:10.1007/s10482-021-01699-0. ISSN 1572-9699.
  10. ^ Wiegand, Sandra; Jogler, Mareike; Jogler, Christian (November 2018). "On the maverick Planctomycetes". academic.oup.com. doi:10.1093/femsre/fuy029. Retrieved 2024-11-11.
  11. ^ Sayers; et al. "Planctomycetaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  12. ^ Vitorino, Inês Rosado; Lage, Olga Maria (2022-02-01). "The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes". Antonie van Leeuwenhoek. 115 (2): 169–201. doi:10.1007/s10482-021-01699-0. ISSN 1572-9699.
  13. ^ "The LTP". Retrieved 20 November 2023.
  14. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  15. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  16. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  17. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  18. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
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