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Davydov-soliton.gif (576 × 425 pixels, file size: 498 KB, MIME type: image/gif, looped, 313 frames, 1 min 3 s)

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Description
English: Quantum dynamics of a Davydov soliton with pN generated by an initial Gaussian step distribution of amide I energy over 3 peptide groups at the N-end of a single α-helix spine composed of 40 peptide groups (extending along the x-axis) during a period of 125 picoseconds. Quantum probabilities of amide I excitation are plotted in blue along the z-axis. Phonon lattice displacement differences (measured in picometers) are plotted in red along the y-axis. The soliton is formed by self-trapping of the amide I energy by the induced lattice distortion.
Date
Source

The file is created using my own mathematical code written for simulation of Davydov soliton

Previously published: Results using my mathematical code were reported in: Danko D Georgiev and James F Glazebrook. On the quantum dynamics of Davydov solitons in protein α-helices. Physica A: Statistical Mechanics and its Applications 517:257-269, 2019.
Author Danko Georgiev

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I, the copyright holder of this work, hereby publish it under the following licenses:
GNU head Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the section entitled GNU Free Documentation License.
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24 December 2018

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ee913eca4c2d590c4d33233f2145010ed22c5e9e

509,574 byte

62.60000000000035 second

425 pixel

576 pixel

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Date/TimeThumbnailDimensionsUserComment
current11:27, 3 April 2020Thumbnail for version as of 11:27, 3 April 2020576 × 425 (498 KB)Bürgerentscheidframes reduced to fit 100 MP limit
12:42, 24 December 2018Thumbnail for version as of 12:42, 24 December 2018576 × 425 (1.79 MB)Danko Georgiev{{subst:Upload marker added by en.wp UW}} {{Information |Description = {{en|Quantum dynamics of a Davydov soliton with χ = 35 pN generated by an initial Gaussian step distribution of amide I energy over 3 peptide groups at the N-end of a single α-helix spine composed of 40 peptide groups (extending along the x-axis) during a period of 125 picoseconds. Quantum probabilities |a_n|^2 are plotted in blue along the z-axis. Phonon lattice displacement differences b_n-b_{n-1} (measured in picometers...

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